Dr. Warkiani is a Senior Lecturer in the School of Biomedical Engineering, UTS, Sydney, Australia. He received his Ph.D. in Mechanical Engineering from Nanyang Technological University (NTU, Singapore), and undertook postdoctoral training at Massachusetts Institute of Technology (MIT, USA). He is also a member of Institute for Biomedical Materials & Devices (IBMD) and Center for Health Technologies (CHT) at UTS, a visiting scientist at the Garvan Institute for Biomedical Research as well as Translational Cancer Research Network (TCRN).
Dr Warkiani’s current research activities focus on three key areas of (i) Microfluidics involving the design and development of novel microfluidic systems for particle and cell sorting (e.g., circulating tumor cells, fetal cells & stem cells) for diagnostic and therapeutic applications, (ii) Bio-MEMS involving the fabrication and characterization of novel 3D lab-on-a-chip systems to model physiological functions of tissues and organs, and (iii) 3D Printing involving the design and development of novel miniaturized systems (e.g., micromixers, micro-cyclones) for basic and applied research.
- Nanyang Outstanding Young Alumni Award (2016).
- MIT TR35 young investigator, Asia-Pacific Region (2016).
- Fresh Science Program, Australia (2015).
- Students’ Design Gold Award, Biomedical Engineering Society, Singapore, (2014).
- SMART prestigious fellowship (2013).
- Best student paper award at AMN-APLOC 2011, 5-7 January, Singapore.
- Best research proposal award at NanoMemCourse 2010 at Netherlands.
- A*STAR prestigious scholarship for PhD study at NTU (2009)
For more information, please visit my group homepage: http://www.warkianilab.com
Can supervise: YES
Introduction to BioMEMS
Engineering Biomedical Polymer
Microfluidic cell-separation technologies have been studied for almost two decades, but the limited throughput has restricted their impact and range of application. Recent advances in microfluidics enable high-throughput cell sorting and separation, and this has led to various novel diagnostic and therapeutic applications that previously had been impossible to implement using microfluidics technologies. In this review, we focus on recent progress made in engineering large-volume microfluidic cell-sorting methods and the new applications enabled by them.
Biglari, S, Le, TYL, Tan, RP, Wise, SG, Zambon, A, Codolo, G, De Bernard, M, Warkiani, M, Schindeler, A, Naficy, S, Valtchev, P, Khademhosseini, A & Dehghani, F 2019, 'Simulating Inflammation in a Wound Microenvironment Using a Dermal Wound-on-a-Chip Model.', Advanced healthcare materials, vol. 8, no. 1, p. e1801307.View/Download from: Publisher's site
Considerable progress has been made in the field of microfluidics to develop complex systems for modeling human skin and dermal wound healing processes. While microfluidic models have attempted to integrate multiple cell types and/or 3D culture systems, to date they have lacked some elements needed to fully represent dermal wound healing. This paper describes a cost-effective, multicellular microfluidic system that mimics the paracrine component of early inflammation close to normal wound healing. Collagen and Matrigel are tested as materials for coating and adhesion of dermal fibroblasts and human umbilical vein endothelial cells (HUVECs). The wound-on-chip model consists of three interconnecting channels and is able to simulate wound inflammation by adding tumor necrosis factor alpha (TNF-) or by triculturing with macrophages. Both the approaches significantly increase IL-1, IL-6, IL-8 in the supernatant (p < 0.05), and increases in cytokine levels are attenuated by cotreatment with an anti-inflammatory agent, Dexamethasone. Incorporation of M1 and M2 macrophages cocultured with fibroblasts and HUVECs leads to a stimulation of cytokine production as well as vascular structure formation, particularly with M2 macrophages. In summary, this wound-on-chip system can be used to model the paracrine component of the early inflammatory phase of wound healing and has the potential for the screening of anti-inflammatory compounds.
Gerami, A, Alzahid, Y, Mostaghimi, P, Kashaninejad, N, Kazemifar, F, Amirian, T, Mosavat, N, Ebrahimi Warkiani, M & Armstrong, RT 2018, 'Microfluidics for Porous Systems: Fabrication, Microscopy and Applications', Transport in Porous Media.View/Download from: Publisher's site
© 2018, Springer Nature B.V. No matter how sophisticated the structures are and on what length scale the pore sizes are, fluid displacement in porous media can be visualized, captured, mimicked and optimized using microfluidics. Visualizing transport processes is fundamental to our understanding of complex hydrogeological systems, petroleum production, medical science applications and other engineering applications. Microfluidics is an ideal tool for visual observation of flow at high temporal and spatial resolution. Experiments are typically fast, as sample volume is substantially low with the use of miniaturized devices. This review first discusses the fabrication techniques for generating microfluidics devices, experimental setups and new advances in microfluidic fabrication using three-dimensional printing, geomaterials and biomaterials. We then address multiphase transport in subsurface porous media, with an emphasis on hydrology and petroleum engineering applications in the past few decades. We also cover the application of microfluidics to study membrane systems in biomedical science and particle sorting. Lastly, we explore how synergies across different disciplines can lead to innovations in this field. A number of problems that have been resolved, topics that are under investigation and cutting-edge applications that are emerging are highlighted.
Ghorbani, S, Eyni, H, Tiraihi, T, Asl, LS, Soleimani, M, Atashi, A, Beiranvand, SP & Warkiani, ME 2018, 'Combined effects of 3D bone marrow stem cell-seeded wet-electrospun poly lactic acid scaffolds on full-thickness skin wound healing', International Journal of Polymeric Materials and Polymeric Biomaterials, vol. 67, no. 15, pp. 905-912.View/Download from: UTS OPUS or Publisher's site
© 2017 Taylor & Francis. Tissue engineering has emerged as an alternative treatment to traditional grafts for skin wound healing. Three-dimensional nanofibers have been used extensively for this purpose due to their excellent biomedical-related properties. In this study, high porous 3D poly lactic acid nanofibrous scaffolds (PLA-S) were prepared by wet-electrospinning technique and seeded with rat bone-marrow stem cells (BMSCs) to characterize the biocompatibility and therapeutic efficacy of these fibers on the treating full-thickness dermal wounds. The results of in vitro andin vivo studies indicate that the 3D fibrous PLA-S can be a potential wound dressing for wound repair, particularly when seeded with BMSCs. GRAPHICAL ABSTRACT.
Hassanzadeh-Barforoushi, A, Law, AMK, Hejri, A, Asadnia, M, Ormandy, CJ, Gallego-Ortega, D & Ebrahimi Warkiani, M 2018, 'Static droplet array for culturing single live adherent cells in an isolated chemical microenvironment.', Lab on a chip, vol. 18, no. 15, pp. 2156-2166.View/Download from: Publisher's site
We present here a new method to easily and reliably generate an array of hundreds of dispersed nanoliter-volume semi-droplets for single-cells culture and analysis. The liquid segmentation step occurs directly in indexed traps by a tweezer-like mechanism and is stabilized by spatial confinement. Unlike common droplet-based techniques, the semi-droplet wets its surrounding trap walls thus supporting the culturing of both adherent and non-adherent cells. To eliminate cross-droplet cell migration and chemical cross-talk each semi-droplet is separated from a nearby trap by an 80 pL air plug. The overall setup and injection procedure takes less than 10 minutes, is insensitive to fabrication defects and supports cell recovery for downstream analysis. The method offers a new approach to easily capture, image and culture single cells in a chemically isolated microenvironment as a preliminary step towards high-throughput single-cell assays.
Kapeleris, J, Kulasinghe, A, Warkiani, ME, Vela, I, Kenny, L, O'Byrne, K & Punyadeera, C 2018, 'The prognostic role of circulating tumor cells (CTCs) in lung cancer', Frontiers in Oncology, vol. 8, no. AUG.View/Download from: Publisher's site
© 2018 Kapeleris, Kulasinghe, Warkiani, Vela, Kenny, O'Byrne and Punyadeera. Lung cancer affects over 1. 8 million people worldwide and is the leading cause of cancer related mortality globally. Currently, diagnosis of lung cancer involves a combination of imaging and invasive biopsies to confirm histopathology. Non-invasive diagnostic techniques under investigation include "liquid biopsies" through a simple blood draw to develop predictive and prognostic biomarkers. A better understanding of circulating tumor cell (CTC) dissemination mechanisms offers promising potential for the development of techniques to assist in the diagnosis of lung cancer. Enumeration and characterization of CTCs has the potential to act as a prognostic biomarker and to identify novel drug targets for a precision medicine approach to lung cancer care. This review will focus on the current status of CTCs and their potential diagnostic and prognostic utility in this setting.
Khan, H, Razmjou, A, Ebrahimi Warkiani, M, Kottapalli, A & Asadnia, M 2018, 'Sensitive and Flexible Polymeric Strain Sensor for Accurate Human Motion Monitoring.', Sensors (Basel, Switzerland), vol. 18, no. 2.View/Download from: Publisher's site
Flexible electronic devices offer the capability to integrate and adapt with human body. These devices are mountable on surfaces with various shapes, which allow us to attach them to clothes or directly onto the body. This paper suggests a facile fabrication strategy via electrospinning to develop a stretchable, and sensitive poly (vinylidene fluoride) nanofibrous strain sensor for human motion monitoring. A complete characterization on the single PVDF nano fiber has been performed. The charge generated by PVDF electrospun strain sensor changes was employed as a parameter to control the finger motion of the robotic arm. As a proof of concept, we developed a smart glove with five sensors integrated into it to detect the fingers motion and transfer it to a robotic hand. Our results shows that the proposed strain sensors are able to detect tiny motion of fingers and successfully run the robotic hand.
Kulasinghe, A, Schmidt, H, Perry, C, Whitfield, B, Kenny, L, Nelson, C, Warkiani, ME & Punyadeera, C 2018, 'A Collective Route to Head and Neck Cancer Metastasis', Scientific Reports, vol. 8, no. 1.View/Download from: UTS OPUS or Publisher's site
© 2018 The Author(s). Distant metastasis (DM) from head and neck cancers (HNC) portends a poor patient prognosis. Despite its important biological role, little is known about the cells which seed these DM. Circulating tumour cells (CTCs) represent a transient cancer cell population, which circulate in HNC patients' peripheral blood and seed at distant sites. Capture and analysis of CTCs offers insights into tumour metastasis and can facilitate treatment strategies. Whilst the data on singular CTCs have shown clinical significance, the role of CTC clusters in metastasis remains limited. In this pilot study, we assessed 60 treatment naïve HNC patients for CTCs with disease ranging from early to advanced stages, for CTC clusters utilizing spiral CTC enrichment technology. Single CTCs were isolated in 18/60-30% (Ranging from Stage I-IV), CTC clusters in 15/60-25% (exclusively Stage IV) with 3/15-20% of CTC clusters also containing leukocytes. The presence of CTC clusters associated with the development of distant metastatic disease(P = 0.0313). This study demonstrates that CTC clusters are found in locally advanced patients, and this may be an important prognostic marker. In vivo and in vitro studies are warranted to determine the role of these CTC clusters, in particular, whether leukocyte involvement in CTC clusters has clinical relevance.
Kulasinghe, A, Wu, H, Punyadeera, C & Warkiani, M 2018, 'The use of microfluidic technology for cancer applications and liquid biopsy'.
Marsavela, G, Aya-Bonilla, CA, Warkiani, ME, Gray, ES & Ziman, M 2018, 'Melanoma circulating tumor cells: Benefits and challenges required for clinical application', Cancer Letters, vol. 424, pp. 1-8.View/Download from: Publisher's site
© 2018 The implementation of novel therapeutic interventions has improved the survival rates of melanoma patients with metastatic disease. Nonetheless, only 33% of treated cases exhibit long term responses. Circulating tumor cell (CTC) measurements are currently of clinical value in breast, prostate and colorectal cancers. However, the clinical utility of melanoma CTCs (MelCTCs) is still unclear due to challenges that appear intrinsic to MelCTCs (i.e. rarity, heterogeneity) and a lack of standardization in their isolation, across research laboratories. Here, we review the latest developments, pinpoint the challenges in MelCTC isolation and address their potential role in melanoma management.
Moazzam, P, Tavassoli, H, Razmjou, A, Warkiani, ME & Asadnia, M 2018, 'Mist harvesting using bioinspired polydopamine coating and microfabrication technology', Desalination, vol. 429, pp. 111-118.View/Download from: Publisher's site
© 2017 Elsevier B.V. The fascinating biopolymer of polydopamine (PDA) and negative photolithography method was utilized to produce porous membrane surfaces with contrast wettabilities via creating hydrophilic patterns (nanoscale PDA coated SU-8 bumps) on the hydrophobic background of polypropylene (PP) membranes. The high rate of water collection (97 mg cm 2 h 1) highlighted the impact of hydrophilic patterns and wetting properties on mist-harvesting results. Modified samples exhibited droplet motion by coalescence rather than rolling which means created hydrophilic patterns also have a significant impact on the behavior of the droplets on these surfaces. Surface characterization including Scanning Electron Microscopy (SEM), Atomic Force Microscopy (AFM) and contact angle as well as surface free energy measurement were performed to study the effect of topography and roughness on the system performance. This created structure has the great potential to be fabricated in large scale. Also, due to the porous nature of its hydrophobic background, water collection rate can be substantially increased by using vacuum pressure, makes it attractive for industry.
Moloudi, R, Oh, S, Yang, C, Ebrahimi Warkiani, M & Naing, MW 2018, 'Inertial particle focusing dynamics in a trapezoidal straight microchannel: application to particle filtration', Microfluidics and Nanofluidics, vol. 22, no. 3.View/Download from: Publisher's site
© 2018, Springer-Verlag GmbH Germany, part of Springer Nature. Inertial microfluidics has emerged recently as a promising tool for high-throughput manipulation of particles and cells for a wide range of flow cytometric tasks including cell separation/filtration, cell counting, and mechanical phenotyping. Inertial focusing is profoundly reliant on the cross-sectional shape of channel and its impacts on not only the shear field but also the wall-effect lift force near the wall region. In this study, particle focusing dynamics inside trapezoidal straight microchannels was first studied systematically for a broad range of channel Re number (20 OpenSPiltSPi Re OpenSPiltSPi 800). The altered axial velocity profile and consequently new shear force arrangement led to a cross-lateral movement of equilibration toward the longer side wall when the rectangular straight channel was changed to a trapezoid; however, the lateral focusing started to move backward toward the middle and the shorter side wall, depending on particle clogging ratio, channel aspect ratio, and slope of slanted wall, as the channel Reynolds number further increased (Re CloseSPigtSPi 50). Remarkably, an almost complete transition of major focusing from the longer side wall to the shorter side wall was found for large-sized particles of clogging ratio K ~ 0.9 (K = a/Hmin) when Re increased noticeably to ~ 650. Finally, based on our findings, a trapezoidal straight channel along with a bifurcation was designed and applied for continuous filtration of a broad range of particle size (0.3 OpenSPiltSPi K OpenSPiltSPi 1) exiting through the longer wall outlet with ~ 99% efficiency (Re OpenSPiltSPi 100).
Moloudi, R, Oh, S, Yang, C, Teo, KL, Lam, ATL, Warkiani, ME & Naing, MW 2018, 'Inertial-Based Filtration Method for Removal of Microcarriers from Mesenchymal Stem Cell Suspensions', Scientific Reports, vol. 8, no. 1.View/Download from: Publisher's site
© 2018, The Author(s). Rapidly evolving cell-based therapies towards clinical trials demand alternative approaches for efficient expansion of adherent cell types such as human mesenchymal stem cells (hMSCs). Using microcarriers (100–300 µm) in a stirred tank bioreactor offers considerably enhanced surface to volume ratio of culture environment. However, downstream purification of the harvested cell product needs to be addressed carefully due to distinctive features and fragility of these cell products. This work demonstrates a novel alternative approach which utilizes inertial focusing to separate microcarriers (MCs) from the final cell suspension. First, we systematically investigated MC focusing dynamics inside scaled-up curved channels with trapezoidal and rectangular cross-sections. A trapezoidal spiral channel with ultra-low-slope (Tan() = 0.0375) was found to contribute to strong MC focusing (~300 < Re < ~400) while managing high MC volume fractions up to ~1.68%. Accordingly, the high-throughput trapezoidal spiral channel successfully separated MCs from hMSC suspension with total cell yield~94% (after two passes) at a high volumetric flow rate of ~30 mL/min (Re~326.5).
Moshksayan, K, Kashaninejad, N, Warkiani, ME, Lock, JG, Moghadas, H, Firoozabadi, B, Saidi, MS & Nguyen, NT 2018, 'Spheroids-on-a-chip: Recent advances and design considerations in microfluidic platforms for spheroid formation and culture', Sensors and Actuators, B: Chemical, vol. 263, pp. 151-176.View/Download from: Publisher's site
© 2018 Elsevier B.V. A cell spheroid is a three-dimensional (3D) aggregation of cells. Synthetic, in-vitro spheroids provide similar metabolism, proliferation, and species concentration gradients to those found in-vivo. For instance, cancer cell spheroids have been demonstrated to mimic in-vivo tumor microenvironments, and are thus suitable for in-vitro drug screening. The first part of this paper discusses the latest microfluidic designs for spheroid formation and culture, comparing their strategies and efficacy. The most recent microfluidic techniques for spheroid formation utilize emulsion, microwells, U-shaped microstructures, or digital microfluidics. The engineering aspects underpinning spheroid formation in these microfluidic devices are therefore considered. In the second part of this paper, design considerations for microfluidic spheroid formation chips and microfluidic spheroid culture chips (SFCs and SCCs) are evaluated with regard to key parameters affecting spheroid formation, including shear stress, spheroid diameter, culture medium delivery and flow rate. This review is intended to benefit the microfluidics community by contributing to improved design and engineering of microfluidic chips capable of forming and/or culturing three-dimensional cell spheroids.
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim Nature has long inspired scientists and engineers. As one ubiquitous example of this, nature has provided all with several clever methods to absorb, repel, and/or allow both sunlight and water to pass through surfaces. Moth's eyes (highly antireflective) and lotus leaves (highly hydrophobic and self-cleaning) represent durable natural surfaces which exhibit nearly ideal physical and optical properties. Man-made transparent surfaces must also be able to cope with water and dust while reaching the maximum possible light transmission for solar collectors, displays, and other optical devices. To explore the link between these – particularly for transparent surfaces – this review puts the physics, progress, and limitations of synthetic materials in context with natural materials. This perspective reveals that there is still much more to learn (and implement) if it is hoped to match the multifunctionality and resilience of natural materials.
Razavi Bazaz, S, Mehrizi, AA, Ghorbani, S, Vasilescu, S, Asadnia, M & Ebrahimi Warkiani, M 2018, 'A hybrid micromixer with planar mixing units', RSC Advances, vol. 8, no. 58, pp. 33103-33120.View/Download from: UTS OPUS or Publisher's site
© The Royal Society of Chemistry. The application of microfluidic systems in chemical and biological assays has progressed dramatically in recent years. One of the fundamental operations that microfluidic devices must achieve is a high mixing index. Of particular importance is the role of planar mixing units with repetitive obstacles (MURO) in the formation of micromixers. To date, a myriad of planar passive micromixers has been proposed. However, a strategy for the combination of these units to find an efficient planar mixer has not been investigated. As such, five different MURO have been selected to form a 'hybrid micromixer,' and their combination was evaluated via numerical and experimental methods. These mixing units include ellipse-like, Tesla, nozzle and pillar, teardrop, and obstruction in a curved mixing unit. Since these units have distinctive dimensions, dynamic and geometric similarities were used to scale and connect them. Afterwards, six slots were designated to house each mixing unit. Since the evaluation of all possible unit configurations is not feasible, the design of experiment method is applied to reduce the total number of experiments from 15625 to 25. Following this procedure, the 'hybrid' micromixer proposed here, comprising Tesla, nozzle and pillar, and obstruction units, shows improved performance for a wide range of Re (i.e., mixing index of >90% for Re 0.001-0.1, 22-45) over existing designs. The use of velocity profiles, concentration diagrams, vorticity and circulation plots assist in the analysis of each unit. Comparison of the proposed 'hybrid' micromixer with other obstacle-based planar micromixers demonstrates improved performance, indicating the combination of planar mixing units is a useful strategy for building high-performance micromixers.
Rezaei, M, Winter, M, Zander-Fox, D, Whitehead, C, Liebelt, J, Warkiani, ME, Hardy, T & Thierry, B 2018, 'A Reappraisal of Circulating Fetal Cell Noninvasive Prenatal Testing', Trends in Biotechnology.View/Download from: Publisher's site
© 2018 Elsevier Ltd New tools for higher-resolution fetal genome analysis including microarray and next-generation sequencing have revolutionized prenatal screening. This article provides commentary on this rapidly advancing field and a future perspective emphasizing circulating fetal cell (CFC) utility. Despite the tremendous technological challenges associated with their reliable and cost-effective isolation from maternal blood, CFCs have a strong potential to bridge the gap between the diagnostic sensitivity of invasive procedures and the desirable noninvasive nature of cell-free fetal DNA (cffDNA). Considering the rapid advances in both rare cell isolation and low-input DNA analysis, we argue here that CFC-based noninvasive prenatal testing is poised to be implemented clinically in the near future.
Sofela, S, Sahloul, S, Rafeie, M, Kwon, T, Han, J, Warkiani, ME & Song, Y-A 2018, 'High-throughput sorting of eggs for synchronization of C. elegans in a microfluidic spiral chip.', Lab on a chip, vol. 18, no. 4, pp. 679-687.View/Download from: Publisher's site
In this study, we report the use of a high-throughput microfluidic spiral chip to screen out eggs from a mixed age nematode population, which can subsequently be cultured to a desired developmental stage. For the sorting of a mixture containing three different developmental stages, eggs, L1 and L4, we utilized a microfluidic spiral chip with a trapezoidal channel to obtain a sorting efficiency of above 97% and a sample purity (SP) of above 80% for eggs at different flow rates up to 10 mL min-1. The result demonstrated a cost-effective, simple, and highly efficient method for synchronizing C. elegans at a high throughput (4200 organisms per min at 6 mL min-1), while eliminating challenges such as clogging and non-reusability of membrane-based filtration. Due to its simplicity, our method can be easily adopted in the C. elegans research community.
Stefen, H, Hassanzadeh-Barforoushi, A, Brettle, M, Fok, S, Suchowerska, AK, Tedla, N, Barber, T, Warkiani, ME & Fath, T 2018, 'A Novel Microfluidic Device-Based Neurite Outgrowth Inhibition Assay Reveals the Neurite Outgrowth-Promoting Activity of Tropomyosin Tpm3.1 in Hippocampal Neurons', Cellular and Molecular Neurobiology, vol. 38, no. 8, pp. 1557-1563.View/Download from: UTS OPUS or Publisher's site
© 2018, Springer Science+Business Media, LLC, part of Springer Nature. Overcoming neurite inhibition is integral for restoring neuronal connectivity after CNS injury. Actin dynamics are critical for neurite growth cone formation and extension. The tropomyosin family of proteins is a regarded as master regulator of actin dynamics. This study investigates tropomyosin isoform 3.1 (Tpm3.1) as a potential candidate for overcoming an inhibitory substrate, as it is known to influence neurite branching and outgrowth. We designed a microfluidic device that enables neurons to be grown adjacent to an inhibitory substrate, Nogo-66. Results show that neurons, overexpressing hTpm3.1, have an increased propensity to overcome Nogo-66 inhibition. We propose Tpm3.1 as a potential target for promoting neurite growth in an inhibitory environment in the central nervous system.
Syed, MS, Rafeie, M, Vandamme, D, Asadnia, M, Henderson, R, Taylor, RA & Warkiani, ME 2018, 'Selective separation of microalgae cells using inertial microfluidics.', Bioresource technology, vol. 252, pp. 91-99.View/Download from: Publisher's site
Microalgae represent the most promising new source of biomass for the world's growing demands. However, the biomass productivity and quality is significantly decreased by the presence of bacteria or other invading microalgae species in the cultures. We therefore report a low-cost spiral-microchannel that can effectively separate and purify Tetraselmis suecica (lipid-rich microalgae) cultures from Phaeodactylum tricornutum (invasive diatom). Fluorescent polystyrene-microbeads of 6m and 10m diameters were first used as surrogate particles to optimize the microchannel design by mimicking the microalgae cell behaviour. Using the optimum flowrate, up to 95% of the P. tricornutum cells were separated from the culture without affecting the cell viability. This study shows, for the first time, the potential of inertial microfluidics to sort microalgae species with minimal size difference. Additionally, this approach can also be applied as a pre-sorting technique for water quality analysis.
Tavassoli, H, Alhosseini, SN, Tay, A, Chan, PPY, Weng Oh, SK & Warkiani, ME 2018, 'Large-scale production of stem cells utilizing microcarriers: A biomaterials engineering perspective from academic research to commercialized products', Biomaterials, vol. 181, pp. 333-346.View/Download from: Publisher's site
© 2018 Elsevier Ltd Human stem cells, including pluripotent, embryonic and mesenchymal, stem cells play pivotal roles in cell-based therapies. Over the past decades, various methods for expansion and differentiation of stem cells have been developed to satisfy the burgeoning clinical demands. One of the most widely endorsed technologies for producing large cell quantities is using microcarriers (MCs) in bioreactor culture systems. In this review, we focus on microcarriers properties that can manipulate the expansion and fate of stem cells. Here, we provide an overview of commercially available MCs and focus on novel stimulus responsive MCs controlled by temperature, pH and field changes. Different features of MCs including composition, surface coating, morphology, geometry/size, surface functionalization, charge and mechanical properties, and their cellular effects are also highlighted. We then conclude with current challenges and outlook on this promising technology.
Winter, M, Hardy, T, Rezaei, M, Nguyen, V, Zander-Fox, D, Ebrahimi Warkiani, M & Thierry, B 2018, 'Isolation of Circulating Fetal Trophoblasts Using Inertial Microfluidics for Noninvasive Prenatal Testing', Advanced Materials Technologies, vol. 3, no. 7.View/Download from: Publisher's site
© 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim While noninvasive prenatal testing based on cell-free fetal DNA has recently revolutionized the field of aneuploidy screening in pregnancy, it remains limited to aneuploidy and microdeletion screening, and is unable to reliably detect single gene disorders. A number of recent studies have demonstrated the potential of circulating trophoblastic cells in providing cell-based noninvasive diagnosis with sequencing or array-based assays. However, considering the extreme rarity of these cells in blood, efficient, high-throughput, and clinically applicable enrichment technologies are yet to be developed. This study demonstrates for the first time the utility of inertial microfluidics for efficient isolation of trophoblastic cells from maternal peripheral blood. Under optimal operating conditions, high-recovery yields (79%) are obtained using a trophoblastic cell-line, which is subsequently confirmed with analysis of maternal blood. Feasibility of obtaining a diagnosis from cells isolated from a maternal sample is demonstrated in a case of confirmed fetal trisomy 21 in which six fetal cells are found in a 7 mL blood sample using fluorescence in situ hybridization. Finally, it is demonstrated that trophoblastic cells isolated using inertial microfluidics could be picked and subjected to a clinically validated sequencing assay, paving the way for further validation of this technology and larger clinical studies.
Abbasnejad, B, Thorby, W, Razmjou, A, Jin, D, Asadnia, M & Ebrahimi Warkiani, M 2018, 'MEMS piezoresistive flow sensors for sleep apnea therapy', Sensors and Actuators, A: Physical, vol. 279, pp. 577-585.View/Download from: UTS OPUS or Publisher's site
© 2018 Elsevier B.V. A MEMS liquid crystal polymer (LCP), used in the membrane-based pressure sensor, has been found highly useful as a flow sensor. Here we conducted a set of elaborate experiments using an air flow generator to investigate the potential of our LCP flow sensor for sleep apnea therapy. Critical properties of the LCP flow sensor, including flow range, resolution (sensitivity), accuracy, and response time, have been systematically characterized. As a result, LCP flow sensor achieves a limit of detection of 8 LPM to measure flow rate, better than the commercial flow sensor (>10 LPM). Our LCP flow sensor shows a favourable response in a large flow range (8–160 LPM) with a sensitivity of detecting a linear voltage response of 0.004 V per 1 LPM flow rate. With minimum detectable flow, high sensitivity and resolution, we further demonstrated our LCP flow sensor for detecting human respiration. Moreover, using a two- dimensional simulation in COMSOL Multiphysics, we demonstrated the deformation of LCP membrane in response to different flow velocities which leads to resistance change in sensor's strain gauge.
Alizadeh, A, Warkiani, ME & Wang, M 2017, 'Manipulating electrokinetic conductance of nanofluidic channel by varying inlet pH of solution', Microfluidics and Nanofluidics, vol. 21, no. 3, pp. 1-15.View/Download from: UTS OPUS or Publisher's site
© 2017, Springer-Verlag Berlin Heidelberg. The electrokinetic conductivity of micro-/nanofluidic systems, which strongly depends on the local solution properties (e.g., pH and ionic strength), has wide applications in nanosystems to control the system performance and ion rectification. Accurate and active manipulation of this parameter is proven to be very challenging since, in nanoscale, the ion transport is particularly dominated by the acquired surface charge on the solid–liquid interfaces. In this study, we propose an approach to manipulate the nanochannel electrokinetic conductivity by changing the pH value of the solution at the inlet in order to impose asymmetrical conditions inside nanochannel. The variable surface charge of walls is determined by considering the chemical adsorption on the solid–liquid interface and the electrical double layer interaction. The presented numerical model, which couples Poisson–Nernst–Planck and Navier–Stokes equations, can fully consider the electro-chemo-mechanical transport phenomena and predict the electrokinetic conductivity of nanofluidic channels with good accuracy. Modeling results show that the electrokinetic conductivity of the nanofluidic systems can be regulated by varying the solution pH at the inlet. It is revealed that the stronger electric double layers interaction can enhance the sensitivity of the nanochannel electrokinetic conductance to the inlet pH. This unique behavior of the nanochannel electrokinetic conductivity could broaden potential applications in biomedical, energy, and environmental systems using nanofluidic devices.
Asadnia, M, Ehteshami, SMM, Chan, SH & Warkiani, ME 2017, 'Development of a fiber-based membraneless hydrogen peroxide fuel cell', RSC Advances, vol. 7, no. 65, pp. 40755-40760.View/Download from: UTS OPUS or Publisher's site
© 2017 The Royal Society of Chemistry. In this paper, polyvinylidene fluoride (PVDF) nanofibers have been suggested as a viable substrate for flexible and implantable electrochemical devices. PVDF electrospun nanofibers exhibit excellent mechanical properties, flexibility, chemical stability, and biocompatibility, making them a potential option in the development of implant fuel cells. This paper presents a membraneless hydrogen peroxide fuel cell that is fabricated to demonstrate the possibility of using these nanofibers as the substrate for electrochemical devices. An open circuit potential of 0.65 V was achieved for the cell fabricated using Prussian Blue (PB) as the cathode material and nickel and aluminium as the anode materials. The power produced by the cell was 1 mW cm-2at 0.32 V. The results presented compare favourably with available power generators reviewed in the literature. Based on the proof of concept demonstration; PVDF electrospun nanofibers can be successfully used for implantable electrochemical devices such as bio-fuel cells and self-sustained point-of-care diagnostic systems.
Asadnia, M, Khorasani, AM & Warkiani, ME 2017, 'An Accurate PSO-GA Based Neural Network to Model Growth of Carbon Nanotubes', Journal of Nanomaterials, vol. 2017.View/Download from: UTS OPUS or Publisher's site
© 2017 Mohsen Asadnia et al. By combining particle swarm optimization (PSO) and genetic algorithms (GA) this paper offers an innovative algorithm to train artificial neural networks (ANNs) for the purpose of calculating the experimental growth parameters of CNTs. The paper explores experimentally obtaining data to train ANNs, as a method to reduce simulation time while ensuring the precision of formal physics models. The results are compared with conventional particle swarm optimization based neural network (CPSONN) and Levenberg-Marquardt (LM) techniques. The results show that PSOGANN can be successfully utilized for modeling the experimental parameters that are critical for the growth of CNTs.
Gerami, A, Armstrong, RT, Johnston, B, Warkiani, ME, Mosavat, N & Mostaghimi, P 2017, 'Coal-on-a-Chip: Visualizing Flow in Coal Fractures', Energy and Fuels, vol. 31, no. 10, pp. 10393-10403.View/Download from: UTS OPUS or Publisher's site
© 2017 American Chemical Society. Geomaterial microfluidics are the next generation of tools necessary for studying fluid flows related to subsurface engineering technologies. Traditional microfluidic devices do not capture surface wettability and roughness parameters that can have a significant influence on porous media flows. This is particularly important for coal seam gas reservoirs in which methane gas is transported through a well-developed system of natural fractures that display unique wettability and roughness characteristics. A coal geomaterial microfluidic device can be generated by etching a fracture pattern on a coal surface by using three-dimensional laser micromachining; however, it is unclear if the resulting surface properties are representative of real coal. In an effort to generate a realistic coal microfluidic device, we characterize coal surface roughness properties from real coal cleats. We then compare these results to the roughness of the patterns, generated from laser etching. Roughness measurements in real coal fractures show that cleats and microfractures are mostly oriented parallel to the coal beddings rather than perpendicular to the bedding, which is important when selecting coal for fabrication of a microfluidic device since we find that the natural microfractures influence the resulting roughness of etched fractures. We also compare resulting coal/brine/gas contact angles under static and dynamics conditions. The contact angle for coal is highly heterogeneous. Surface roughness and pore pressure may influence the contact angle. With the aid of the coal geomaterial device, the effect of these parameters on coal wettability can be explored and a range of possible coal contact angles can be visualized and represented. The geomaterial fabrication, as outlined herein, provides a tool to capture more realistic coal surface properties in microfluidics experiments.
Kulasinghe, A, Perry, C, Kenny, L, Warkiani, ME, Nelson, C & Punyadeera, C 2017, 'PD-L1 expressing circulating tumour cells in head and neck cancers.', BMC Cancer, vol. 17, no. 1, pp. 1-6.View/Download from: UTS OPUS or Publisher's site
Blockade of the PD-1/PD-L1 immune checkpoint pathway is emerging as a promising immunotherapeutic approach for the management and treatment of head and neck cancer patients who do not respond to 1st/2nd line therapy. However, as checkpoint inhibitors are cost intensive, identifying patients who would most likely benefit from anti PD-L1 therapy is required. Developing a non-invasive technique would be of major benefit to the patient and to the health care system.We report the case of a 56 year old man affected by a supraglottic squamous cell carcinoma (SCC). A CT scan showed a 20 mm right jugulodigastric node and suspicious lung lesions. The lung lesion was biopsied and confirmed to be consistent with SCC. The patient was offered palliative chemotherapy. At the time of presentation, a blood sample was taken for circulating tumour cell (CTC) analysis. The dissemination of cancer was confirmed by the detection of CTCs in the peripheral blood of the patient, measured by the CellSearch System (Janssen Diagnostics). Using marker-independent, low-shear spiral microfluidic technology combined with immunocytochemistry, CTC clusters were found in this patient at the same time point, expressing PD-L1.This report highlights the potential use of CTCs to identify patients which might respond to anti PD-L1 therapy.
Kulasinghe, A, Tran, THP, Blick, T, O'Byrne, K, Thompson, EW, Warkiani, ME, Nelson, C, Kenny, L & Punyadeera, C 2017, 'Enrichment of circulating head and neck tumour cells using spiral microfluidic technology', Scientific Reports, vol. 7, pp. 1-10.View/Download from: UTS OPUS or Publisher's site
© 2017 The Author(s). Whilst locoregional control of head and neck cancers (HNCs) has improved over the last four decades, long-term survival has remained largely unchanged. A possible reason for this is that the rate of distant metastasis has not changed. Such disseminated disease is reflected in measurable levels of cancer cells in the blood of HNC patients, referred to as circulating tumour cells (CTCs). Numerous marker-independent techniques have been developed for CTC isolation and detection. Recently, microfluidics-based platforms have come to the fore to avoid molecular bias. In this pilot, proof of concept study, we evaluated the use of the spiral microfluidic chip for CTC enrichment and subsequent detection in HNC patients. CTCs were detected in 13/24 (54%) HNC patients, representing both early to late stages of disease. Importantly, in 7/13 CTC-positive patients, CTC clusters were observed. This is the first study to use spiral microfluidics technology for CTC enrichment in HNC.
Kwon, T, Prentice, H, Oliveira, JD, Madziva, N, Warkiani, ME, Hamel, J-FP & Han, J 2017, 'Microfluidic Cell Retention Device for Perfusion of Mammalian Suspension Culture.', Scientific Reports, vol. 7, no. 1, pp. 1-11.View/Download from: UTS OPUS or Publisher's site
Continuous production of biologics, a growing trend in the biopharmaceutical industry, requires a reliable and efficient cell retention device that also maintains cell viability. Current filtration methods, such as tangential flow filtration using hollow-fiber membranes, suffer from membrane fouling, leading to significant reliability and productivity issues such as low cell viability, product retention, and an increased contamination risk associated with filter replacement. We introduce a novel cell retention device based on inertial sorting for perfusion culture of suspended mammalian cells. The device was characterized in terms of cell retention capacity, biocompatibility, scalability, and long-term reliability. This technology was demonstrated using a high concentration (>20 million cells/mL) perfusion culture of an IgG1-producing Chinese hamster ovary (CHO) cell line for 18-25 days. The device demonstrated reliable and clog-free cell retention, high IgG1 recovery (>99%) and cell viability (>97%). Lab-scale perfusion cultures (350mL) were used to demonstrate the technology, which can be scaled-out with parallel devices to enable larger scale operation. The new cell retention device is thus ideal for rapid perfusion process development in a biomanufacturing workflow.
Rafeie, M, Welleweerd, M, Hassanzadeh-Barforoushi, A, Asadnia, M, Olthuis, W & Warkiani, ME 2017, 'An easily fabricated three-dimensional threaded lemniscate-shaped micromixer for a wide range of flow rates', Biomicrofluidics, vol. 11, no. 1, pp. 1-15.View/Download from: UTS OPUS or Publisher's site
Mixing fluid samples or reactants is a paramount function in the fields of micro total analysis system (TAS) and microchemical processing. However, rapid and efficient fluid mixing is difficult to achieve inside microchannels because of the difficulty of diffusive mass transfer in the laminar regime of the typical microfluidic flows. It has been well recorded that the mixing efficiency can be boosted by migrating from two-dimensional (2D) to three-dimensional (3D) geometries. Although several 3D chaotic mixers have been designed, most of them offer a high mixing efficiency only in a very limited range of Reynolds numbers (Re). In this work, we developed a 3D fine-threaded lemniscate-shaped micromixer whose maximum numerical and empirical efficiency is around 97% and 93%, respectively, and maintains its high performance (i.e., >90%) over a wide range of 1
Ramalingam, N, Warkiani, ME & Hai-Qing Gong, T 2017, 'Acetylated bovine serum albumin differentially inhibits polymerase chain reaction in microdevices', Biomicrofluidics, vol. 11, no. 3, pp. 1-7.View/Download from: UTS OPUS or Publisher's site
Bovine serum albumin (BSA) is widely used as an additive in polymerase chain reaction (PCR)-based microfluidic devices to passivate reactors and alleviate nucleic-acid amplification. BSA is available commercially in two types: either acetylated or non-acetylated. A survey of literature indicates that both types of BSA are used in PCR-based microfluidic devices. Our study results reveal that the use of acetylated BSA in PCR micro-devices leads to differential inhibition of PCR, compared to non-acetylated BSA. This result is noticed for the first time, and the differential inhibition generally goes un-noticed, as compared to complete PCR inhibition.
Razmjou, A, Asadnia, M, Ghaebi, O, Yang, HC, Ebrahimi Warkiani, M, Hou, J & Chen, V 2017, 'Preparation of Iridescent 2D Photonic Crystals by Using a Mussel-Inspired Spatial Patterning of ZIF-8 with Potential Applications in Optical Switch and Chemical Sensor', ACS Applied Materials and Interfaces, vol. 9, no. 43, pp. 38076-38080.View/Download from: UTS OPUS or Publisher's site
© 2017 American Chemical Society. In this work, spatial patterning of a thin, dense, zeolitic imidazolate framework (ZIF-8) pattern was generated using photolithography and nanoscale (60 nm) dopamine coating. A bioinspired, unique, reversible, two-color iridescent pattern can be easily obtained for potential applications in sensing and photonics.
Sengupta, D, Kottapalli, AGP, Chen, SH, Miao, JM, Kwok, CY, Triantafyllou, MS, Warkiani, ME & Asadnia, M 2017, 'Characterization of single polyvinylidene fluoride (PVDF) nanofiber for flow sensing applications', AIP Advances, vol. 7, no. 10, pp. 1-8.View/Download from: UTS OPUS or Publisher's site
© 2017 Author(s). The use of Polyvinylidene Fluoride (PVDF) based piezoelectric nanofibers for sensing and actuation has been reported widely in the past. However, in most cases, PVDF piezoelectric nanofiber mats have been used for sensing applications. This work fundamentally characterizes a single electrospun PVDF nanofiber and demonstrates its application as a sensing element for nanoelectromechanical sensors (NEMS). PVDF nanofiber mats were spun by far field electrospinning (FFES) process and complete material characterization was conducted by means of scanning electron microscope (SEM) imaging, Raman Spectroscopy and FTIR spectroscopy. An optimized recipe was developed for spinning a single suspended nanofiber on a specially designed MEMS substrate which allows the nano-mechanical and electrical characterization of a single PVDF nanofiber. Electrical characterization is conducted using a single suspended nanofiber to determine the piezoelectric coefficient (d33) of the nanofiber to be -58.77 pm/V. Also the mechanical characterization conducted using a nanoindenter revealed a Young's Modulus and hardness of 2.2 GPa and 0.1 GPa respectively. Finally, an application that utilizes the single PVDF nanofiber as a sensing element to form a NEMS flow sensor is demonstrated. The single nanofiber flow sensor is tested in presence of various oscillatory flow conditions.
Shakeel Syed, M, Rafeie, M, Henderson, R, Vandamme, D, Asadnia, M & Ebrahimi Warkiani, M 2017, 'A 3D-printed mini-hydrocyclone for high throughput particle separation: application to primary harvesting of microalgae.', Lab on a chip, vol. 17, no. 14, pp. 2459-2469.View/Download from: UTS OPUS or Publisher's site
The separation of micro-sized particles in a continuous flow is crucial part of many industrial processes, from biopharmaceutical manufacturing to water treatment. Conventional separation techniques such as centrifugation and membrane filtration are largely limited by factors such as clogging, processing time and operation efficiency. Microfluidic based techniques have been gaining great attention in recent years as efficient and powerful approaches for particle-liquid separation. Yet the production of such systems using standard micro-fabrication techniques is proven to be tedious, costly and have cumbersome user interfaces, which all render commercialization difficult. Here, we demonstrate the design, fabrication and evaluation based on CFD simulation as well as experimentation of 3D-printed miniaturized hydrocyclones with smaller cut-size for high-throughput particle/cell sorting. The characteristics of the mini-cyclones were numerically investigated using computational fluid dynamics (CFD) techniques previously revealing that reduction in the size of the cyclone results in smaller cut-size of the particles. To showcase its utility, high-throughput algae harvesting from the medium with low energy input is demonstrated for the marine microalgae Tetraselmis suecica. Final microalgal biomass concentration was increased by 7.13 times in 11 minutes of operation time using our designed hydrocyclone (HC-1). We expect that this elegant approach can surmount the shortcomings of other microfluidic technologies such as clogging, low-throughput, cost and difficulty in operation. By moving away from production of planar microfluidic systems using conventional microfabrication techniques and embracing 3D-printing technology for construction of discrete elements, we envision 3D-printed mini-cyclones can be part of a library of standardized active and passive microfluidic components, suitable for particle-liquid separation.
Shirani, E, Razmjou, A, Tavassoli, H, Landarani-Isfahani, A, Rezaei, S, Abbasi Kajani, A, Asadnia, M, Hou, J & Ebrahimi Warkiani, M 2017, 'Strategically Designing a Pumpless Microfluidic Device on an "inert" Polypropylene Substrate with Potential Application in Biosensing and Diagnostics', Langmuir, vol. 33, no. 22, pp. 5565-5576.View/Download from: UTS OPUS or Publisher's site
© 2017 American Chemical Society. This study is an attempt to make a step forward to implement the very immature concept of pumpless transportation of liquid into a real miniaturized device or lab-on-chip (LOC) on a plastic substrate. "Inert" plastic materials such as polypropylene (PP) are used in a variety of biomedical applications but their surface engineering is very challenging. Here, it was demonstrated that with a facile innovative wettability patterning route using fluorosilanized UV-independent TiO 2 nanoparticle coating it is possible to create wedge-shaped open microfluidic tracks on inert solid surfaces for low-cost biomedical devices (lab-on-plastic). For the future miniaturization and integration of the tracks into a device, a variety of characterization techniques were used to not only systematically study the surface patterning chemistry and topography but also to have a clear knowledge of its biological interactions and performance. The effect of such surface architecture on the biological performance was studied in terms of static/dynamic protein (bovine serum albumin) adsorption, bacterial (Staphylococcus aureus and Staphylococcus epidermidis) adhesion, cell viability (using HeLa and MCF-7 cancer cell lines as well as noncancerous human fibroblast cells), and cell patterning (Murine embryonic fibroblasts). Strategies are discussed for incorporating such a confined track into a diagnostic device in which its sensing portion is based on protein, microorganism, or cells. Finally, for the proof-of-principle of biosensing application, the well-known high-affinity molecular couple of BSA-antiBSA as a biological model was employed.
Asadnia, M, Kottapalli, AGP, Karavitaki, KD, Warkiani, ME, Miao, J, Corey, DP & Triantafyllou, M 2016, 'From Biological Cilia to Artificial Flow Sensors: Biomimetic Soft Polymer Nanosensors with High Sensing Performance.', Scientific reports, vol. 6, p. 32955.View/Download from: Publisher's site
We report the development of a new class of miniature all-polymer flow sensors that closely mimic the intricate morphology of the mechanosensory ciliary bundles in biological hair cells. An artificial ciliary bundle is achieved by fabricating bundled polydimethylsiloxane (PDMS) micro-pillars with graded heights and electrospinning polyvinylidenefluoride (PVDF) piezoelectric nanofiber tip links. The piezoelectric nature of a single nanofiber tip link is confirmed by X-ray diffraction (XRD) and Fourier transform infrared spectroscopy (FTIR). Rheology and nanoindentation experiments are used to ensure that the viscous properties of the hyaluronic acid (HA)-based hydrogel are close to the biological cupula. A dome-shaped HA hydrogel cupula that encapsulates the artificial hair cell bundle is formed through precision drop-casting and swelling processes. Fluid drag force actuates the hydrogel cupula and deflects the micro-pillar bundle, stretching the nanofibers and generating electric charges. Functioning with principles analogous to the hair bundles, the sensors achieve a sensitivity and threshold detection limit of 300mV/(m/s) and 8m/s, respectively. These self-powered, sensitive, flexible, biocompatibale and miniaturized sensors can find extensive applications in navigation and maneuvering of underwater robots, artificial hearing systems, biomedical and microfluidic devices.
Chaudhuri, PK, Ebrahimi Warkiani, M, Jing, T, Kenry & Lim, CT 2016, 'Microfluidics for research and applications in oncology.', The Analyst, vol. 141, no. 2, pp. 504-524.View/Download from: Publisher's site
Cancer is currently one of the top non-communicable human diseases, and continual research and developmental efforts are being made to better understand and manage this disease. More recently, with the improved understanding in cancer biology as well as the advancements made in microtechnology and rapid prototyping, microfluidics is increasingly being explored and even validated for use in the detection, diagnosis and treatment of cancer. With inherent advantages such as small sample volume, high sensitivity and fast processing time, microfluidics is well-positioned to serve as a promising platform for applications in oncology. In this review, we look at the recent advances in the use of microfluidics, from basic research such as understanding cancer cell phenotypes as well as metastatic behaviors to applications such as the detection, diagnosis, prognosis and drug screening. We then conclude with a future outlook on this promising technology.
Hassanzadeh-Barforoushi, A, Shemesh, J, Farbehi, N, Asadnia, M, Yeoh, GH, Harvey, RP, Nordon, RE & Warkiani, ME 2016, 'A rapid co-culture stamping device for studying intercellular communication.', Scientific reports, vol. 6, p. 35618.View/Download from: Publisher's site
Regulation of tissue development and repair depends on communication between neighbouring cells. Recent advances in cell micro-contact printing and microfluidics have facilitated the in-vitro study of homotypic and heterotypic cell-cell interaction. Nonetheless, these techniques are still complicated to perform and as a result, are seldom used by biologists. We report here development of a temporarily sealed microfluidic stamping device which utilizes a novel valve design for patterning two adherent cell lines with well-defined interlacing configurations to study cell-cell interactions. We demonstrate post-stamping cell viability of >95%, the stamping of multiple adherent cell types, and the ability to control the seeded cell density. We also show viability, proliferation and migration of cultured cells, enabling analysis of co-culture boundary conditions on cell fate. We also developed an in-vitro model of endothelial and cardiac stem cell interactions, which are thought to regulate coronary repair after myocardial injury. The stamp is fabricated using microfabrication techniques, is operated with a lab pipettor and uses very low reagent volumes of 20l with cell injection efficiency of >70%. This easy-to-use device provides a general strategy for micro-patterning of multiple cell types and will be important for studying cell-cell interactions in a multitude of applications.
Hesari, Z, Soleimani, M, Atyabi, F, Sharifdini, M, Nadri, S, Nadri, S, Warkiani, ME, Zare, M & Dinarvand, R 2016, 'A hybrid microfluidic system for regulation of neural differentiation in induced pluripotent stem cells.', Journal of biomedical materials research. Part A, vol. 104, no. 6, pp. 1534-1543.View/Download from: Publisher's site
Controlling cellular orientation, proliferation, and differentiation is valuable in designing organ replacements and directing tissue regeneration. In the present study, we developed a hybrid microfluidic system to produce a dynamic microenvironment by placing aligned PDMS microgrooves on surface of biodegradable polymers as physical guidance cues for controlling the neural differentiation of human induced pluripotent stem cells (hiPSCs). The neuronal differentiation capacity of cultured hiPSCs in the microfluidic system and other control groups was investigated using quantitative real time PCR (qPCR) and immunocytochemistry. The functionally of differentiated hiPSCs inside hybrid system's scaffolds was also evaluated on the rat hemisected spinal cord in acute phase. Implanted cell's fate was examined using tissue freeze section and the functional recovery was evaluated according to the Basso, Beattie, and Bresnahan (BBB) locomotor rating scale. Our results confirmed the differentiation of hiPSCs to neuronal cells on the microfluidic device where the expression of neuronal-specific genes was significantly higher compared to those cultured on the other systems such as plain tissue culture dishes and scaffolds without fluidic channels. Although survival and integration of implanted hiPSCs did not lead to a significant functional recovery, we believe that combination of fluidic channels with nanofiber scaffolds provides a great microenvironment for neural tissue engineering, and can be used as a powerful tool for in situ monitoring of differentiation potential of various kinds of stem cells. © 2016 Wiley Periodicals, Inc. J Biomed Mater Res Part A: 104A: 1534-1543, 2016.
Khoo, BL, Chaudhuri, PK, Ramalingam, N, Tan, DSW, Lim, CT & Warkiani, ME 2016, 'Single-cell profiling approaches to probing tumor heterogeneity.', International journal of cancer, vol. 139, no. 2, pp. 243-255.View/Download from: Publisher's site
Tumor heterogeneity is a major hindrance in cancer classification, diagnosis and treatment. Recent technological advances have begun to reveal the true extent of its heterogeneity. Single-cell analysis (SCA) is emerging as an important approach to detect variations in morphology, genetic or proteomic expression. In this review, we revisit the issue of inter- and intra-tumor heterogeneity, and list various modes of SCA techniques (cell-based, nucleic acid-based, protein-based, metabolite-based and lipid-based) presently used for cancer characterization. We further discuss the advantages of SCA over pooled cell analysis, as well as the limitations of conventional techniques. Emerging trends, such as high-throughput sequencing, are also mentioned as improved means for cancer profiling. Collectively, these applications have the potential for breakthroughs in cancer treatment.
Kulasinghe, A, Perry, C, Warkiani, ME, Blick, T, Davies, A, O'Byrne, K, Thompson, EW, Nelson, CC, Vela, I & Punyadeera, C 2016, 'Short term ex-vivo expansion of circulating head and neck tumour cells.', Oncotarget, vol. 7, no. 37, pp. 60101-60109.View/Download from: Publisher's site
Minimally invasive techniques are required for the identification of head and neck cancer (HNC) patients who are at an increased risk of metastasis, or are not responding to therapy. An approach utilised in other solid cancers is the identification and enumeration of circulating tumour cells (CTCs) in the peripheral blood of patients. Low numbers of CTCs has been a limiting factor in the HNC field to date. Here we present a methodology to expand HNC patient derived CTCs ex-vivo. As a proof of principle study, 25 advanced stage HNC patient bloods were enriched for circulating tumour cells through negative selection and cultured in 2D and 3D culture environments under hypoxic conditions (2% O2, 5% CO2). CTCs were detected in 14/25 (56%) of patients (ranging from 1-15 CTCs/5 mL blood). Short term CTC cultures were successfully generated in 7/25 advanced stage HNC patients (5/7 of these cultures were from HPV+ patients). Blood samples from which CTC culture was successful had higher CTC counts (p = 0.0002), and were predominantly from HPV+ patients (p = 0.007). This is, to our knowledge, the first pilot study to culture HNC CTCs ex-vivo. Further studies are warranted to determine the use of short term expansion in HNC and the role of HPV in promoting culture success.
Pavesi, A, Adriani, G, Tay, A, Warkiani, ME, Yeap, WH, Wong, SC & Kamm, RD 2016, 'Engineering a 3D microfluidic culture platform for tumor-treating field application.', Scientific reports, vol. 6, p. 26584.View/Download from: Publisher's site
The limitations of current cancer therapies highlight the urgent need for a more effective therapeutic strategy. One promising approach uses an alternating electric field; however, the mechanisms involved in the disruption of the cancer cell cycle as well as the potential adverse effects on non-cancerous cells must be clarified. In this study, we present a novel microfluidic device with embedded electrodes that enables the application of an alternating electric field therapy to cancer cells in a 3D extracellular matrix. To demonstrate the potential of our system to aid in designing and testing new therapeutic approaches, cancer cells and cancer cell aggregates were cultured individually or co-cultured with endothelial cells. The metastatic potential of the cancer cells was reduced after electric field treatment. Moreover, the proliferation rate of the treated cancer cells was lower compared with that of the untreated cells, whereas the morphologies and proliferative capacities of the endothelial cells were not significantly affected. These results demonstrate that our novel system can be used to rapidly screen the effect of an alternating electric field on cancer and normal cells within an in vivo-like microenvironment with the potential to optimize treatment protocols and evaluate synergies between tumor-treating field treatment and chemotherapy.
Rafeie, M, Zhang, J, Asadnia, M, Li, W & Warkiani, ME 2016, 'Multiplexing slanted spiral microchannels for ultra-fast blood plasma separation.', Lab on a chip, vol. 16, no. 15, pp. 2791-2802.View/Download from: Publisher's site
Blood and blood products are critical components of health care. Blood components perform distinct functions in the human body and thus the ability to efficiently fractionate blood into its individual components (i.e., plasma and cellular components) is of utmost importance for therapeutic and diagnostic purposes. Although conventional approaches like centrifugation and membrane filtration for blood processing have been successful in generating relatively pure fractions, they are largely limited by factors such as the required blood sample volume, component purity, clogging, processing time and operation efficiency. In this work, we developed a high-throughput inertial microfluidic system for cell focusing and blood plasma separation from small to large volume blood samples (1-100 mL). Initially, polystyrene beads and blood cells were used to investigate the inertial focusing performance of a single slanted spiral microchannel as a function of particle size, flow rate, and blood cell concentration. Afterwards, blood plasma separation was conducted using an optimised spiral microchannel with relatively large dimensions. It was found that the reject ratio of the slanted spiral channel is close to 100% for blood samples with haematocrit (HCT) values of 0.5% and 1% under an optimal flow rate of 1.5 mL min(-1). Finally, through a unique multiplexing approach, we built a high-throughput system consisting of 16 spiral channels connected together, which can process diluted samples with a total flow rate as high as 24 mL min(-1). The proposed multiplexed system can surmount the shortcomings of previously reported microfluidic systems for plasma separation and cell sorting in terms of throughput, yield and operation efficiency.
Ramalingam, N, Warkiani, ME, Ramalingam, N, Keshavarzi, G, Hao-Bing, L & Hai-Qing, TG 2016, 'Numerical and experimental study of capillary-driven flow of PCR solution in hybrid hydrophobic microfluidic networks.', Biomedical microdevices, vol. 18, no. 4, p. 68.View/Download from: Publisher's site
Capillary-driven microfluidics is essential for development of point-of-care diagnostic micro-devices. Polymerase chain reaction (PCR)-based micro-devices are widely developed and used in such point-of-care settings. It is imperative to characterize the fluid parameters of PCR solution for designing efficient capillary-driven microfluidic networks. Generally, for numeric modelling, the fluid parameters of PCR solution are approximated to that of water. This procedure leads to inaccurate results, which are discrepant to experimental data. This paper describes mathematical modeling and experimental validation of capillary-driven flow inside Poly-(dimethyl) siloxane (PDMS)-glass hybrid micro-channels. Using experimentally measured PCR fluid parameters, the capillary meniscus displacement in PDMS-glass microfluidic ladder network is simulated using computational fluid dynamic (CFD), and experimentally verified to match with the simulated data.
Tay, A, Pavesi, A, Yazdi, SR, Lim, CT & Warkiani, ME 2016, 'Advances in microfluidics in combating infectious diseases.', Biotechnology advances, vol. 34, no. 4, pp. 404-421.View/Download from: Publisher's site
One of the important pursuits in science and engineering research today is to develop low-cost and user-friendly technologies to improve the health of people. Over the past decade, research efforts in microfluidics have been made to develop methods that can facilitate low-cost diagnosis of infectious diseases, especially in resource-poor settings. Here, we provide an overview of the recent advances in microfluidic devices for point-of-care (POC) diagnostics for infectious diseases and emphasis is placed on malaria, sepsis and AIDS/HIV. Other infectious diseases such as SARS, tuberculosis, and dengue are also briefly discussed. These infectious diseases are chosen as they contribute the most to disability-adjusted life-years (DALYs) lost according to the World Health Organization (WHO). The current state of research in this area is evaluated and projection toward future applications and accompanying challenges are also discussed.
Warkiani, ME, Khoo, BL, Wu, L, Tay, AKP, Bhagat, AAS, Han, J & Lim, CT 2016, 'Ultra-fast, label-free isolation of circulating tumor cells from blood using spiral microfluidics.', Nature protocols, vol. 11, no. 1, pp. 134-148.View/Download from: Publisher's site
Circulating tumor cells (CTCs) are rare cancer cells that are shed from primary or metastatic tumors into the peripheral blood circulation. Phenotypic and genetic characterization of these rare cells can provide important information to guide cancer staging and treatment, and thus further research into their characteristics and properties is an area of considerable interest. In this protocol, we describe detailed procedures for the production and use of a label-free spiral microfluidic device to allow size-based isolation of viable CTCs using hydrodynamic forces that are present in curvilinear microchannels. This spiral system enables us to achieve 85% recovery of spiked cells across multiple cancer cell lines and 99.99% depletion of white blood cells in whole blood. The described spiral microfluidic devices can be produced at an extremely low cost using standard microfabrication and soft lithography techniques (2-3 d), and they can be operated using two syringe pumps for lysed blood samples (7.5 ml in 12.5 min for a three-layered multiplexed chip). The fast processing time and the ability to collect CTCs from a large patient blood volume allows this technique to be used experimentally in a broad range of potential genomic and transcriptomic applications.
Zarepour, E, Hassan, M, Chou, CT & Ebrahimi Warkiani, M 2016, 'Characterizing terahertz channels for monitoring human lungs with wireless nanosensor networks', Nano Communication Networks, vol. 9, pp. 43-57.View/Download from: Publisher's site
© 2016 We characterize terahertz wireless channels for extracting data from nanoscale sensors deployed within human lungs. We discover that the inhalation and exhalation of oxygen and carbon dioxide causes periodic variation of the absorption coefficient of the terahertz channel. Channel absorption drops to its minimum near the end of inhalation, providing a window of opportunity to extract data with minimum transmission power. We propose an algorithm for nanosensors to estimate the periodic channel by observing signal-to-noise ratio of the beacons transmitted from the data sink. Using real respiration data from multiple subjects, we demonstrate that the proposed algorithm can estimate the minimum absorption interval of the periodic channel with 98.5% accuracy. Our analysis shows that by confining all data collections during the estimated low-absorption window of the periodic channel, nanosensors can reduce power consumption by six orders of magnitude. Finally, we demonstrate that for wireless communications within human lungs, 0.1–0.12 THz is the least absorbing spectrum within the terahertz band.
Zhang, J, Yan, S, Yuan, D, Alici, G, Nguyen, N-T, Ebrahimi Warkiani, M & Li, W 2016, 'Fundamentals and applications of inertial microfluidics: a review.', Lab on a chip, vol. 16, no. 1, pp. 10-34.View/Download from: Publisher's site
In the last decade, inertial microfluidics has attracted significant attention and a wide variety of channel designs that focus, concentrate and separate particles and fluids have been demonstrated. In contrast to conventional microfluidic technologies, where fluid inertia is negligible and flow remains almost within the Stokes flow region with very low Reynolds number (Re 1), inertial microfluidics works in the intermediate Reynolds number range (~1 < Re < ~100) between Stokes and turbulent regimes. In this intermediate range, both inertia and fluid viscosity are finite and bring about several intriguing effects that form the basis of inertial microfluidics including (i) inertial migration and (ii) secondary flow. Due to the superior features of high-throughput, simplicity, precise manipulation and low cost, inertial microfluidics is a very promising candidate for cellular sample processing, especially for samples with low abundant targets. In this review, we first discuss the fundamental kinematics of particles in microchannels to familiarise readers with the mechanisms and underlying physics in inertial microfluidic systems. We then present a comprehensive review of recent developments and key applications of inertial microfluidic systems according to their microchannel structures. Finally, we discuss the perspective of employing fluid inertia in microfluidics for particle manipulation. Due to the superior benefits of inertial microfluidics, this promising technology will still be an attractive topic in the near future, with more novel designs and further applications in biology, medicine and industry on the horizon.
Asadnia, M, Kottapalli, AGP, Miao, J, Warkiani, ME & Triantafyllou, MS 2015, 'Artificial fish skin of self-powered micro-electromechanical systems hair cells for sensing hydrodynamic flow phenomena.', Journal of the Royal Society Interface, vol. 12, no. 111, p. 20150322.View/Download from: Publisher's site
Using biological sensors, aquatic animals like fishes are capable of performing impressive behaviours such as super-manoeuvrability, hydrodynamic flow 'vision' and object localization with a success unmatched by human-engineered technologies. Inspired by the multiple functionalities of the ubiquitous lateral-line sensors of fishes, we developed flexible and surface-mountable arrays of micro-electromechanical systems (MEMS) artificial hair cell flow sensors. This paper reports the development of the MEMS artificial versions of superficial and canal neuromasts and experimental characterization of their unique flow-sensing roles. Our MEMS flow sensors feature a stereolithographically fabricated polymer hair cell mounted on Pb(Zr(0.52)Ti(0.48))O3 micro-diaphragm with floating bottom electrode. Canal-inspired versions are developed by mounting a polymer canal with pores that guide external flows to the hair cells embedded in the canal. Experimental results conducted employing our MEMS artificial superficial neuromasts (SNs) demonstrated a high sensitivity and very low threshold detection limit of 22 mV/(mm s(-1)) and 8.2 µm s(-1), respectively, for an oscillating dipole stimulus vibrating at 35 Hz. Flexible arrays of such superficial sensors were demonstrated to localize an underwater dipole stimulus. Comparative experimental studies revealed a high-pass filtering nature of the canal encapsulated sensors with a cut-off frequency of 10 Hz and a flat frequency response of artificial SNs. Flexible arrays of self-powered, miniaturized, light-weight, low-cost and robust artificial lateral-line systems could enhance the capabilities of underwater vehicles.
Jing, T, Ramji, R, Warkiani, ME, Han, J, Lim, CT & Chen, C-H 2015, 'Jetting microfluidics with size-sorting capability for single-cell protease detection.', Biosensors & bioelectronics, vol. 66, pp. 19-23.View/Download from: Publisher's site
Activated proteases such as matrix metalloproteinases (MMPs) secreted from cancer cells can degrade the extracellular matrix (ECM) and contribute to tumour formation and metastasis. Measuring MMP activity in individual cancer cells can provide important insights on cancer cell heterogeneity and disease progression. Here, we present a microfluidic platform combining a droplet jetting generator and a deterministic lateral displacement (DLD) size-sorting channel that is capable of encapsulating individual cancer cells inside picoliter droplets effectively. Droplet jetting with cell-triggered Rayleigh-Plateau instability was employed which produced large droplets capable of cell encapsulation (diameter, ~25µm) and small empty droplets (diameter, ~14µm), which were then size-separated using a DLD size-sorting channel to enrich the single-cell encapsulated droplets (~78%), regardless of the cell density of input sample solutions. The droplets containing encapsulated cancer cells were collected in an observation chamber to determine the kinetic profiles of MMP secretion and the inhibitory response in the presence of the drug doxycycline at the single-cell level to reveal their heterogeneous MMPs secretion activities.
Khoo, BL, Lee, SC, Kumar, P, Tan, TZ, Warkiani, ME, Ow, SGW, Nandi, S, Lim, CT & Thiery, JP 2015, 'Short-term expansion of breast circulating cancer cells predicts response to anti-cancer therapy.', Oncotarget, vol. 6, no. 17, pp. 15578-15593.View/Download from: Publisher's site
Circulating tumor cells (CTCs) are considered as surrogate markers for prognosticating and evaluating patient treatment responses. Here, 226 blood samples from 92 patients with breast cancer, including patients with newly diagnosed or metastatic refractory cancer, and 16 blood samples from healthy subjects were cultured in laser-ablated microwells. Clusters containing an increasing number of cytokeratin-positive (CK+) cells appeared after 2 weeks, while most blood cells disappeared with time. Cultures were heterogeneous and exhibited two distinct sub-populations of cells: 'Small' ( 25 m; high nuclear/cytoplasmic ratio; CD45-) cells, comprising CTCs, and 'Large' (> 25 m; low nuclear/cytoplasmic ratio; CD68+ or CD56+) cells, corresponding to macrophage and natural killer-like cells. The Small cell fraction also showed copy number increases in six target genes (FGFR1, Myc, CCND1, HER2, TOP2A and ZNF217) associated with breast cancer. These expanded CTCs exhibited different proportions of epithelial-mesenchymal phenotypes and were transferable for further expansion as spheroids in serum-free suspension or 3D cultures. Cluster formation was affected by the presence and duration of systemic therapy, and its persistence may reflect therapeutic resistance. This novel and advanced method estimates CTC clonal heterogeneity and can predict, within a relatively short time frame, patient responses to therapy.
Shemesh, J, Jalilian, I, Shi, A, Heng Yeoh, G, Knothe Tate, ML & Ebrahimi Warkiani, M 2015, 'Flow-induced stress on adherent cells in microfluidic devices.', Lab on a chip, vol. 15, no. 21, pp. 4114-4127.View/Download from: Publisher's site
Transduction of mechanical forces and chemical signals affect every cell in the human body. Fluid flow in systems such as the lymphatic or circulatory systems modulates not only cell morphology, but also gene expression patterns, extracellular matrix protein secretion and cell-cell and cell-matrix adhesions. Similar to the role of mechanical forces in adaptation of tissues, shear fluid flow orchestrates collective behaviours of adherent cells found at the interface between tissues and their fluidic environments. These behaviours range from alignment of endothelial cells in the direction of flow to stem cell lineage commitment. Therefore, it is important to characterize quantitatively fluid interface-dependent cell activity. Common macro-scale techniques, such as the parallel plate flow chamber and vertical-step flow methods that apply fluid-induced stress on adherent cells, offer standardization, repeatability and ease of operation. However, in order to achieve improved control over a cell's microenvironment, additional microscale-based techniques are needed. The use of microfluidics for this has been recognized, but its true potential has emerged only recently with the advent of hybrid systems, offering increased throughput, multicellular interactions, substrate functionalization on 3D geometries, and simultaneous control over chemical and mechanical stimulation. In this review, we discuss recent advances in microfluidic flow systems for adherent cells and elaborate on their suitability to mimic physiologic micromechanical environments subjected to fluid flow. We describe device design considerations in light of ongoing discoveries in mechanobiology and point to future trends of this promising technology.
Microfiltration is a ubiquitous and often crucial part of many industrial processes, including biopharmaceutical manufacturing. Yet, all existing filtration systems suffer from the issue of membrane clogging, which fundamentally limits the efficiency and reliability of the filtration process. Herein, we report the development of a membrane-less microfiltration system by massively parallelizing inertial microfluidics to achieve a macroscopic volume processing rates (~ 500mL/min). We demonstrated the systems engineered for CHO (10-20m) and yeast (3-5m) cells filtration, which are two main cell types used for large-scale bioreactors. Our proposed system can replace existing filtration membrane and provide passive (no external force fields), continuous filtration, thus eliminating the need for membrane replacement. This platform has the desirable combinations of high throughput, low-cost, and scalability, making it compatible for a myriad of microfiltration applications and industrial purposes.
Warkiani, ME, Tay, AKP, Khoo, BL, Xiaofeng, X, Han, J & Lim, CT 2015, 'Malaria detection using inertial microfluidics.', Lab on a chip, vol. 15, no. 4, pp. 1101-1109.View/Download from: Publisher's site
Diagnosis of malaria at the early stage of infection is challenging due to the difficulty in detecting low abundance parasites from blood. Molecular methods such as real-time polymerase chain reaction (qPCR) can be especially useful for detecting low parasitemia levels due to their high sensitivity and their ability to recognize different malarial species and strains. Unfortunately, the accuracy of qPCR-based malaria detection can be compromised by many factors, including the limited specificity of primers, presence of PCR inhibitors in blood serum and DNA contamination from nucleated blood cells. Here, we use a label-free, shear-modulated inertial microfluidic system to enrich malaria parasites from blood so as to facilitate a more reliable and specific PCR-based malaria detection. This technique capitalizes on cell focusing behaviors in high aspect ratio microchannels coupled with pinched flow dynamics to isolate ring-stage malaria parasites from lysed blood containing white blood cells (WBCs). In this high aspect ratio (ratio of the channel height to the width) platform, the high shear rate along the channel width causes the dispersed WBCs at the inlet to migrate and align into two streams near the channel sidewalls while the malaria parasites remain unfocused. Sensitive detection of parasites at spiked densities ranging from 10(3) to 10(4)Plasmodium falciparum parasites per mL (~2-10 per L) has been demonstrated; they have also been quantified in whole blood using qPCR. This is approximately 100-fold more sensitive than the gold standard conventional microscopy analysis of thick blood smears. The simplicity of this device makes it ideal for integration with an automatic system for ultra-fast and accurate detection despite low levels of parasitemia. It can also help in malaria screening and elimination efforts.
Warkiani, ME, Wicaksana, F, Fane, AG & Gong, HQ 2015, 'Investigation of membrane fouling at the microscale using isopore filters', Microfluidics and Nanofluidics, vol. 19, no. 2, pp. 307-315.View/Download from: Publisher's site
© 2014, Springer-Verlag Berlin Heidelberg. Investigations of membrane fouling at the pore-scale have long been of limited interest due to microstructural defects of the commercial membranes that prevent any quantitative analysis of the experimental results. In this paper, we employed novel microengineered membranes with regular pore size to investigate the effect of the membrane pore geometry on the fouling mechanisms during filtration of micron-sized particles. For particles larger than the membrane pore size, the fouling mechanism was pore blockage followed by the cake filtration, while pore narrowing was the dominant mechanism when particles were smaller than the membrane pore size. Filtration with the slotted pore membrane offers some interesting advantages comparing to the filtration with circular pores. The rate of flux decline was slower for the membrane with slotted pores compared with the membrane with circular pores since the initial particle deposition only covered a small fraction of the pores. It was also found that the flow resistance of the slotted pore membrane is much lower than the circular one because a slotted pore has a smaller perimeter than several circular pores with the same total surface area. We can conclude that by proper selection of membrane pore geometry, flux decline can be hindered while maintaining a high selectivity during microfiltration. These findings can be useful also for researchers who are using microfluidic platforms with integrated isopore filters for various applications such as stem cell enrichment, cancer cell isolation, blood fractionation and pathogen removal.
Khoo, BL, Warkiani, ME, Tan, DSW, Bhagat, AAS & Irwin, D 2014, 'Erratum: Clinical validation of an ultra high-throughput spiral microfluidics for the detection and enrichment of viable circulating tumor cells (PLoS ONE 9(7) e99409). doi:10.1371/journal.pone.0099409', PLoS ONE, vol. 9, no. 10.
Khoo, BL, Warkiani, ME, Tan, DS-W, Bhagat, AAS, Irwin, D, Lau, DP, Lim, AST, Lim, KH, Krisna, SS, Lim, W-T, Yap, YS, Lee, SC, Soo, RA, Han, J & Lim, CT 2014, 'Clinical validation of an ultra high-throughput spiral microfluidics for the detection and enrichment of viable circulating tumor cells.', PloS one, vol. 9, no. 7, p. e99409.View/Download from: Publisher's site
Circulating tumor cells (CTCs) are cancer cells that can be isolated via liquid biopsy from blood and can be phenotypically and genetically characterized to provide critical information for guiding cancer treatment. Current analysis of CTCs is hindered by the throughput, selectivity and specificity of devices or assays used in CTC detection and isolation.Here, we enriched and characterized putative CTCs from blood samples of patients with both advanced stage metastatic breast and lung cancers using a novel multiplexed spiral microfluidic chip. This system detected putative CTCs under high sensitivity (100%, n=56) (Breast cancer samples: 12-1275 CTCs/ml; Lung cancer samples: 10-1535 CTCs/ml) rapidly from clinically relevant blood volumes (7.5 ml under 5 min). Blood samples were completely separated into plasma, CTCs and PBMCs components and each fraction were characterized with immunophenotyping (Pan-cytokeratin/CD45, CD44/CD24, EpCAM), fluorescence in-situ hybridization (FISH) (EML4-ALK) or targeted somatic mutation analysis. We used an ultra-sensitive mass spectrometry based system to highlight the presence of an EGFR-activating mutation in both isolated CTCs and plasma cell-free DNA (cf-DNA), and demonstrate concordance with the original tumor-biopsy samples.We have clinically validated our multiplexed microfluidic chip for the ultra high-throughput, low-cost and label-free enrichment of CTCs. Retrieved cells were unlabeled and viable, enabling potential propagation and real-time downstream analysis using next generation sequencing (NGS) or proteomic analysis.
Warkiani, ME, Guan, G, Luan, KB, Lee, WC, Bhagat, AAS, Chaudhuri, PK, Tan, DS-W, Lim, WT, Lee, SC, Chen, PCY, Lim, CT & Han, J 2014, 'Slanted spiral microfluidics for the ultra-fast, label-free isolation of circulating tumor cells.', Lab on a chip, vol. 14, no. 1, pp. 128-137.View/Download from: Publisher's site
The enumeration and characterization of circulating tumor cells (CTCs), found in the peripheral blood of cancer patients, provide a potentially accessible source for cancer diagnosis and prognosis. This work reports on a novel spiral microfluidic device with a trapezoidal cross-section for ultra-fast, label-free enrichment of CTCs from clinically relevant blood volumes. The technique utilizes the inherent Dean vortex flows present in curvilinear microchannels under continuous flow, along with inertial lift forces which focus larger CTCs against the inner wall. Using a trapezoidal cross-section as opposed to a traditional rectangular cross-section, the position of the Dean vortex core can be altered to achieve separation. Smaller hematologic components are trapped in the Dean vortices skewed towards the outer channel walls and eventually removed at the outer outlet, while the larger CTCs equilibrate near the inner channel wall and are collected from the inner outlet. By using a single spiral microchannel with one inlet and two outlets, we have successfully isolated and recovered more than 80% of the tested cancer cell line cells (MCF-7, T24 and MDA-MB-231) spiked in 7.5 mL of blood within 8 min with extremely high purity (400-680 WBCs mL(-1); ~4 log depletion of WBCs). Putative CTCs were detected and isolated from 100% of the patient samples (n = 10) with advanced stage metastatic breast and lung cancer using standard biomarkers (CK, CD45 and DAPI) with the frequencies ranging from 3-125 CTCs mL(-1). We expect this simple and elegant approach can surmount the shortcomings of traditional affinity-based CTC isolation techniques as well as enable fundamental studies on CTCs to guide treatment and enhance patient care.
Warkiani, ME, Khoo, BL, Tan, DS-W, Bhagat, AAS, Lim, W-T, Yap, YS, Lee, SC, Soo, RA, Han, J & Lim, CT 2014, 'An ultra-high-throughput spiral microfluidic biochip for the enrichment of circulating tumor cells.', The Analyst, vol. 139, no. 13, pp. 3245-3255.View/Download from: Publisher's site
The detection and characterization of rare circulating tumor cells (CTCs) from the blood of cancer patients can potentially provide critical insights into tumor biology and hold great promise for cancer management. The ability to collect a large number of viable CTCs for various downstream assays such as quantitative measurements of specific biomarkers or targeted somatic mutation analysis is increasingly important in medical oncology. Here, we present a simple yet reliable microfluidic device for the ultra-high-throughput, label-free, size-based isolation of CTCs from clinically relevant blood volumes. The fast processing time of the technique (7.5 mL blood in less than 10 min) and the ability to collect more CTCs from larger blood volumes lends itself to a broad range of potential genomic and transcriptomic applications. A critical advantage of this protocol is the ability to return all fractions of blood (i.e., plasma (centrifugation), CTCs and white blood cells (WBCs) (size-based sorting)) that can be utilized for diverse biomarker studies or time-sensitive molecular assays such as RT-PCR. The clinical use of this biochip was demonstrated by detecting CTCs from 100% (10/10) of blood samples collected from patients with advanced-stage metastatic breast and lung cancers. The CTC recovery rate ranged from 20 to 135 CTCs mL(-1) and obtained under high purity (of 1 CTC out of every 30-100 WBCs which gives 4 log depletion of WBCs). They were identified with immunofluorescence assays (pan-cytokeratin+/CD45-) and molecular probes such as HER2/neu.
Hou, HW, Warkiani, ME, Khoo, BL, Li, ZR, Soo, RA, Tan, DS-W, Lim, W-T, Han, J, Bhagat, AAS & Lim, CT 2013, 'Isolation and retrieval of circulating tumor cells using centrifugal forces.', Scientific reports, vol. 3, p. 1259.View/Download from: Publisher's site
Presence and frequency of rare circulating tumor cells (CTCs) in bloodstreams of cancer patients are pivotal to early cancer detection and treatment monitoring. Here, we use a spiral microchannel with inherent centrifugal forces for continuous, size-based separation of CTCs from blood (Dean Flow Fractionation (DFF)) which facilitates easy coupling with conventional downstream biological assays. Device performance was optimized using cancer cell lines (> 85% recovery), followed by clinical validation with positive CTCs enumeration in all samples from patients with metastatic lung cancer (n = 20; 5-88CTCs per mL). The presence of CD133 cells, a phenotypic marker characteristic of stem-like behavior in lung cancer cells was also identified in the isolated subpopulation of CTCs. The spiral biochip identifies and addresses key challenges of the next generation CTCs isolation assay including antibody independent isolation, high sensitivity and throughput (3mL/hr); and single-step retrieval of viable CTCs.
Warkiani, ME, Bhagat, AAS, Khoo, BL, Han, J, Lim, CT, Gong, HQ & Fane, AG 2013, 'Isoporous micro/nanoengineered membranes.', ACS nano, vol. 7, no. 3, pp. 1882-1904.View/Download from: Publisher's site
Isoporous membranes are versatile structures with numerous potential and realized applications in various fields of science such as micro/nanofiltration, cell separation and harvesting, controlled drug delivery, optics, gas separation, and chromatography. Recent advances in micro/nanofabrication techniques and material synthesis provide novel methods toward controlling the detailed microstructure of membrane materials, allowing fabrication of membranes with well-defined pore size and shape. This review summarizes the current state-of-the-art for isoporous membrane fabrication using different techniques, including microfabrication, anodization, and advanced material synthesis. Various applications of isoporous membranes, such as protein filtration, pathogen isolation, cell harvesting, biosensing, and drug delivery, are also presented.
Warkiani, ME, Lou, C-P, Liu, H-B & Gong, H-Q 2012, 'A high-flux isopore micro-fabricated membrane for effective concentration and recovering of waterborne pathogens.', Biomedical microdevices, vol. 14, no. 4, pp. 669-677.View/Download from: Publisher's site
A high-flux metallic micro/nano-filtration membrane has been fabricated and validated for isolation of waterborne pathogens from drinking water. Obtained membrane with smooth surface and perfectly ordered pores was achieved by a high yield and cost effective multilevel lithography and electroplating technique. The micro-fabricated membrane was also strengthened with an integrated back-support, which can withstand a high pressure during filtration. The results of microfiltration tests with model particles revealed the superior performance of the micro-fabricated filter than current commercial filters in sample throughput, recovery ratio, and reusability. This study highlighted the potential application of micro-fabricated filer in rapid filtration and recovery of C. parvum oocysts for downstream analysis.
Ebrahimi Warkiani, M, Lou, CP & Gong, HQ 2011, 'Fabrication of multi-layer polymeric micro-sieve having narrow slot pores with conventional ultraviolet-lithography and micro-fabrication techniques', Biomicrofluidics, vol. 5, no. 3.View/Download from: Publisher's site
Fast detection of waterborne pathogens is important for securing the hygiene of drinking water. Detection of pathogens in water at low concentrations and minute quantities demands rapid and efficient enrichment methods in order to improve the signal-to-noise ratio of bio-sensors. We propose and demonstrate a low cost and rapid method to fabricate a multi-layer polymeric micro-sieve using conventional lithography techniques. The micro-fabricated micro-sieves are made of several layers of SU-8 photoresist using multiple coating and exposure steps and a single developing process. The obtained micro-sieves have good mechanical properties, smooth surfaces, high porosity (40%), and narrow pore size distribution (coefficient of variation < 3.33%). Sample loading and back-flushing using the multi-layer micro-sieve resulted in more than 90% recovery of pathogens, which showed improved performance than current commercial filters. © 2011 American Institute of Physics.
Warkiani, ME, Chen, L, Lou, CP, Liu, HB, Zhang, R & Gong, HQ 2011, 'Capturing and recovering of Cryptosporidium parvum oocysts with polymeric micro-fabricated filter', Journal of Membrane Science, vol. 369, no. 1-2, pp. 560-568.View/Download from: Publisher's site
A novel High-Aspect-Ratio (HAR) polymeric micro-filter was micro-fabricated and validated for concentration and recovery of Cryptosporidium parvum (C. parvum) oocysts from tap water. Perfectly ordered pores of the micro-filter were achieved by a high yield and cost effective dissolving mold technique. Obtained filter has micro structural features such as high pore density, uniform pore size, smooth surface, and straight pore path. Sample loading and back-flushing using the filter resulted in nearly 100% recovery of the C. parvum oocysts spiked. The micro-fabricated filter showed improved performance than current commercial filters in sample throughput, recovery ratio, and reusability. This research demonstrated the potential application of the micro-fabricated filter in monitoring C. parvum oocysts contamination in tap water supply system. © 2010 Elsevier B.V.
Warkiani, ME, Lou, CP & Gong, HQ 2011, 'Fabrication and characterization of a microporous polymeric micro-filter for isolation of Cryptosporidium parvum oocysts', Journal of Micromechanics and Microengineering, vol. 21, no. 3.View/Download from: Publisher's site
A rapid and effective method to concentrate Cryptosporidium parvum oocysts present in large volumes of drinking water into smaller volumes is critical for accurate detection and quantification of C. parvum oocysts from drinking water. Filtration-based concentration techniques have been widely used to recover C. parvum oocysts into a small volume for downstream analysis. We present a rapid method for fabrication of a polymeric micro-filter with ordered pores and a smooth surface using UV lithography and MEMS technology. To support the filter membrane, we also developed a technique for integrated fabrication of a support mesh. We demonstrated that the filter is able to isolate the oocysts which can be further detected using fluorescent techniques. Sample loading and back-flushing using the micro-filter resulted in 95-99% recovery with a concentration ratio above 2000 of the spiked C. parvum oocysts, which showed significantly improved performance compared with current commercial filters. © 2011 IOP Publishing Ltd.
Chen, L, Warkiani, ME, Liu, HB & Gong, HQ 2010, 'Polymeric micro-filter manufactured by a dissolving mold technique', Journal of Micromechanics and Microengineering, vol. 20, no. 7.View/Download from: Publisher's site
For filtration applications, we developed a process involving a 'dissolving mold technique' to fabricate polymeric filter membranes which have high aspect ratio pores with narrow pore size distribution. The dissolving mold technique has some advantages over the existing membrane microfabrication methods. Firstly, it resolves thoroughly the demolding problem by dissolving an interim polymer pillar mold, and secondly, it solves the membrane-folding (curling) problem upon releasing the membrane from the mold by integrating a support mesh bonding layer before dissolving of the interim pillar mold. This process is capable of fabricating filter membranes having micrometer and potentially nanometer pore sizes. The fabricated membranes have good mechanical properties, high porosity, smooth surface and uniform pore size distribution. © 2010 IOP Publishing Ltd.
Teymourtash, AR & Ebrahimi Warkiani, M 2009, 'Natural convection over a non-isothermal vertical flat plate in supercritical fluids', Scientia Iranica, vol. 16, no. 6 B, pp. 470-478.
In many applications, convection heat transfer is coupled with conduction and radiation heat transfer, which generate temperature gradients along the walls and may greatly affect natural convection heat transfer. The main objective of this study is to calculate the heat-transfer characteristics for natural convection from a non-isothermal vertical flat plate into a supercritical fluid. The influence of the non-uniformity of wall temperature on the heat transfer by natural convection along a vertical plate, having a linearly distributed temperature (characterized by the slope S) is also investigated. The thermal expansion coefficient is considered as a function of the temperature, the pressure, the van der Waals constants and the compressibility factor. The trends of the curves obtained with this equation and with values from tables of thermodynamic properties were similar and diverged at a critical point. These features confirmed the validity of this equation. Then, the governing systems of partial differential equations are solved numerically using the finite difference method. The local Nusselt number was then calculated and plotted as a function of the local Rayleigh number. It was observed that a positive slope of temperature distribution increases the heat transfer rate and a negative slope decreases it. © Sharif University of Technology, December 2009.
Teymourtash, AR & Warkiani, ME 2009, 'Natural Convection over a Non-Isothermal Vertical Flat Plate in Supercritical Fluids', SCIENTIA IRANICA TRANSACTION B-MECHANICAL ENGINEERING, vol. 16, no. 6, pp. 470-478.
Tay, AKP, Khoo, BL & Warkiani, ME 2018, 'Microfluidics for fast and frugal diagnosis of malaria, sepsis, and HIV/AIDS' in Frugal Innovation in Bioengineering for the Detection of Infectious Diseases, pp. 57-75.View/Download from: Publisher's site
© Springer International Publishing AG 2018. Rapid diagnosis of infectious diseases is necessary for timely treatment and to control spread of diseases. Conventional laboratory approaches are often labor-intensive and associated with time delays that are unacceptable in medical practice. Recent advances in micro-/nanotechnologies have facilitated the development of low-cost microfluidic devices with high sensitivity and throughput that can help reduce healthcare costs and pave the way toward personalized therapy. This chapter covers recent advances in point-of-care (POC) technologies with an emphasis on demonstrated and commercially available systems for diagnosis and treatment of malaria, sepsis, and human immunodeficiency virus (HIV) infection/acquired immune deficiency syndrome (AIDS). The current challenges to practical implementation of these technologies are discussed together with some future perspectives.
Pandya, HJ, Draz, MS, Warkiani, ME & Shafiee, H 2017, 'Rapid diagnosis of infectious diseases using microfluidic systems' in Diagnostic Devices with Microfluidics, pp. 145-161.View/Download from: Publisher's site
© 2017 by Taylor & Francis Group, LLC. Infectious diseases remain the primary public health challenge in many countries. Every year, infectious diseases account for more than 13 million deaths around the world, and for 30% of the total burden of disease. Developing countries are especially challenged with infectious diseases. According to world health organization (WHO), 50% of the total deaths in developing countries are attributed to various infections, including respiratory tract infections, diarrheal diseases, human immunodeficiency virus (HIV), tuberculosis, and malaria. In the healthcare system, a diagnostic cycle consists of several time-consuming steps besides sample transportation, pre-and postanalytical phases, result transmission, and batching practices augmenting the turnaround time from disease interpretation to results (Figure 7.1) [1-3]. The downside of experience-based empiric therapy management involves the choice of inappropriate antibiotherapy or late initiation of treatment often resulting in treatment failure [4-7].
Ghorbani, S, Razavi Bazaz, S, Ebrahimi Warkiani, M, Soleimani, M & Abouei Mehrizi, A 2018, 'Evaluation of Nanofiber PLA Scaffolds Using Dry- and Wet-Electrospinning Methods', 2017 24th Iranian Conference on Biomedical Engineering and 2017 2nd International Iranian Conference on Biomedical Engineering, ICBME 2017.View/Download from: Publisher's site
© 2017 IEEE. Investigating the fabrication of a favorable scaffold is a continuing sconcern and an essential step within tissue engineering. An ideal scaffold should mimic the structure of extracellular matrix (ECM) which has considerable impacts on its function. To meet this demands, in this study, three-dimensional scaffolds by polylactic acid (PLA) polymer 10%, 13%, 15%, 17% and 20% (w/v) with a novel architecture produced by a wet-electrospinning process have been fabricated and compared with dry-electrospun scaffolds that have been developed for tissue engineering applications. In the wet-electrospinning method, an aqueous solution of sodium hydroxide (NaOH) (pH13) has been used as the coagulation bath instead of the aluminum collector which is used in the dry method. Comparing with usual nanofiber non-woven PLA fabric prepared by a conventional electrospinning method, wet-electrospun spongiform PLA nanofiber scaffolds have low apparent density and high porosity. The porosity of the scaffolds has been examined in this two methods and their mechanical properties as well as their morphology are investigated. All in all, it is shown that the novel nanofiber fabrication system would be amazingly useful for the structure control of the nanofiber fabric.
Kottapalli, AGP, Asadnia, M, Karavitaki, KD, Warkiani, ME, Miao, J, Corey, DP & Triantafyllou, M 2018, 'Engineering biomimetic hair bundle sensors for underwater sensing applications', AIP Conference Proceedings.View/Download from: Publisher's site
© 2018 Author(s). We present the fabrication of an artificial MEMS hair bundle sensor designed to approximate the structural and functional principles of the flow-sensing bundles found in fish neuromast hair cells. The sensor consists of micro-pillars of graded height connected with piezoelectric nanofiber "tip-links" and encapsulated by a hydrogel cupula-like structure. Fluid drag force actuates the hydrogel cupula and deflects the micro-pillar bundle, stretching the nanofibers and generating electric charges. These biomimetic sensors achieve an ultrahigh sensitivity of 0.286 mV/(mm/s) and an extremely low threshold detection limit of 8.24 m/s. A complete version of this paper has been published .
Alzahid, Y, Mostaghimi, P, Warkiani, ME, Armstrong, RT, Joekar-Niasar, V & Karadimitriou, N 2017, 'Alkaline surfactant polymer flooding: What happens at the pore scale?', Society of Petroleum Engineers - SPE Europec Featured at 79th EAGE Conference and Exhibition, pp. 386-402.
Copyright © 2017, Society of Petroleum Engineers. Alkaline-surfactant-polymer (ASP) flooding is a Chemical Enhanced Oil Recovery (CEOR) method whereby alkali, surfactant and polymer are injected as the same slug. It is one of the most promising worldwide focus of CEOR research and field trials, due to the unique synergy of the three chemical components. Polymers increase the viscosity of injected water, which improves macroscopic sweep efficiency by stabilizing the displacing front and counteracting heterogeneity effects. Surfactants, on the other hand, decrease the interfacial tension between the injected water and crude oil, which improves microscopic displacement efficiency by mobilizing trapped oil. Alkaline chemicals generate soap when reacting with crude oil, which reduces surfactant adsorption to grain surfaces. To fully understand the flow mechanisms in oil reservoirs and develop efficient recovery methods, it is essential to recognize the physics at the pore scale since this is the length scale at which capillary-trapped oil is mobilized. We developed an experimental micro-scale approach in which oil recovery is analyzed using microfluidics. The micromodels are fabricated based on: (1) a pore network generated via a Delaunay triangulation with an average pore size of 60 µm, (2) X-ray micro-Computed Tomography images of Bentheimer sandstone with resolution of 4.95 µm, and (3) a fractured network with a porosity of 10%. The networks are etched into silicon wafers and used to fabricate polydimethylsiloxane (PDMS) microfluidic devices. We compare not only oil recovery with ASP flooding between different porous networks but we also study displacement mechanisms and pore scale emulsion formation for ASP formulations that exhibit Winsor Type II+, II- and III behaviour. Our studies elucidate micro-scale oil recovery mechanisms for different ASP flooding scenarios. Our results provide direct visualization of the micro-scale phenomena occurring during ASP flooding...
Asadnia, M, Kottapalli, AGP, Warkiani, ME, Miao, JM & Triantafyllou, MS 2017, 'Engineering miniaturized hair cell sensors for auditory system', Proceedings of the IEEE International Conference on Micro Electro Mechanical Systems (MEMS), pp. 1173-1176.View/Download from: UTS OPUS or Publisher's site
© 2017 IEEE. Mechanosensory haircells are well-evolved biological sensors found in nature. In this paper, we present a novel artificial NEMS stereovilli sensor developed through novel fabrication techniques. The NEMS stereovilli sensor fabrication combines soft-polymer material synthesis methods and nanofiber generation techniques with conventional microfabrication methods to form novel flow sensors. The sensor fabrication mainly consists of three major steps which are 1) fabrication of artificial stereovilli of varying aspect ratios, 2) formation of nanofiber tip-links through electrospinning of PVDF material and 3) development of biomimetic HA-MA hydrogel cupula. These artificial sensors closely mimic stereovilli and achieve ultrahigh sensitivities through a biomimetic design. The sensors achieve a sensitivity and threshold detection limit of 300 mV/(m/s) and 8 m/s, respectively.
Barforoushi, AH, Shemesh, J, Farbehi, N, Asadnia, M, Yeoh, GH, Nordon, RE & Warkiani, ME 2016, 'A rapid microfluidic stamping device for studying cardiac stem cells and endothelial cells co-culture', 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016, pp. 1069-1070.
Many biological processes in the body are regulated by synchronized activity between two cell types. Recent advances in cell contact printing have facilitated the in-vitro study of homotypic and heterotypic cell-cell interaction. However, these techniques are still complicated to perform and are seldom used by biologists. We report here development of a novel microfluidic stamping device for patterning two adherent cell lines with well-defined interlacing configurations to study cell-cell spatial interactions. To demonstrate the stamp's capabilities, we developed an in-vitro model of endothelial and cardiac mesenchymal stem cell interactions, which are thought to regulate coronary repair after myocardial injury.
Rafeie, M, Zhang, J, Asadnia, M, Li, W & Warkiani, ME 2016, 'Multiplexing slanted spiral microchannels for ultra-fast blood plasma separation', 20th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2016, pp. 906-907.
The ability to efficiently fractionate blood into its individual components is crucial for therapeutic and diagnostic purposes. Here, we developed an inertial microfluidic system for cell focusing and blood plasma separation. First, polystyrene beads and blood cells were used to investigate the inertial focusing performance of a single slanted spiral microchannel as a function of particle size, flow rate, and the haematocrit (HCT) concentration. Next, we built a high-throughput system consisted of 16 interconnected spiral channels which can process diluted samples at 24 mL/min. The proposed multiplexed system surmounts shortcomings of previously-reported microfluidic systems concerning throughput, yield and operation efficiency.
Chung, CY, Warkiani, ME, Mesgari, S, Rosengarten, G & Taylor, R 2015, 'Thermoset polyester-based superhydrophobic microchannels for nanofluid heat transfer applications', Proceedings of SPIE - The International Society for Optical Engineering.View/Download from: Publisher's site
© 2015 SPIE. Both microchannels and nanofluids have shown promise to enhance convective heat transfer. However, the major drawback of these two technologies is their significant increase of pumping pressure due to increased frictional drag (for high surface area microchannels) or increased viscoelastic frictional drag (for nanofluids). It is possible to decrease frictional drag, and overcome this drawback, by implementing superhydrophobic surfaces to create slip with the channel wall. In this work, surface microstructures fabricated from the thermoset polyester (TPE) were used to create superhydrophobic surfaces which are capable of reducing the frictional drag in channel flow and thus, reduce the pumping pressure. Preliminary experimental results of superhydrophobic microchannels with rib-and-cavity microstructures aligned transversely and longitudinally to the flow direction were studied with both distilled water and water-based multi-walled carbon nanotube (MWCNT) nanofluid as the working fluids. While pressure drop reduction of superhydrophobic surfaces and heat transfer enhancement of nanofluids were shown, it was observed that heat transfer degradation occurred at higher flow rates with MWCNT nanofluid as the working fluid due to the precipitation of nanoparticles.
Kwon, T, Madziva, N, Oliveira, JD, Chandramohan, SK, Yin, L, Prentice, H, Warkiani, ME, Hamel, JFP & Han, J 2015, 'Long-term steady state perfusion culture of mammalian cells using a robust microfluidic cell retention device', MicroTAS 2015 - 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences, pp. 108-110.
© 15CBMS-0001. Cell retention devices are used to retain cells in containers during perfusion culture. However, the conventional membrane-based filtration devices have challenges such as membrane fouling/clogging and increased contamination risk due to frequent filter replacements. To solve these challenges, we introduce a new microfluidic cell retention device based on inertial cell focusing. We demonstrated a long-term steady state perfusion culture of suspended CHO cells, where high density of cells (> 3×106cells/mL) and viability (> 90%) were maintained for more than a week. Our membrane-less and clog-free cell retention device has unique advantage over the conventional filtration devices for perfusion culture.
Shi, A, Shemesh, J, Asadnia, M, Robles, UA, Green, R, Yeoh, GH & Warkiani, ME 2015, 'A novel microfluidic patterning device for neuron-glia co-culture', MicroTAS 2015 - 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences, pp. 633-635.
© 15CBMS-0001. Many biological processes in the body are regulated by synchronized activity between two cell types. To study cell-cell interactions, it is necessary to develop easy to use co-culture systems, where different cell types can be cultured within the same confined space. Designing a complete 3D biomimetic system to study these interactions in vitro requires complex protocols and use of non-conventional materials such as hydrogels. This paper reports development of a temporarily sealed microfluidic device which utilizes a novel valve design to directly and accurately co-culture two cell lines in alternating rows, allowing them to proliferate towards each other and then observe their interaction at the boundaries of their interface.
Zarepour, E, Hassan, M, Chou, CT, Adesina, AA & Warkiani, ME 2015, 'Reliability analysis of time-varying wireless nanoscale sensor networks', IEEE-NANO 2015 - 15th International Conference on Nanotechnology, pp. 63-68.View/Download from: Publisher's site
© 2015 IEEE. Advances in nanotechnology is paving the way for wireless nanoscale sensor networks (WNSNs), promising radically new applications in medical, biological, and chemical fields. The small nanomaterial-based antennas communicate in the terahertz band, which coincide with the natural resonance frequencies of many molecule species causing severe molecular absorption and noise. The problem is particularly more complicated when the channel condition (composition, pressure and temperature) changes over time, causing time-varying absorption. This paper aims to characterise the time-varying property of terahertz communication over a channel whose condition varies over time. Using existing propagation models for WNSNs, we then investigate the reliability of communication over composition varying channels as a major class of time-varying WNSNs. We use WNSN for chemical reactor monitoring and health monitoring as two case studies where channel compositions vary over time. Our simulation results show that for a given transmitted power, the Signal-To-Noise (SNR) and Bit Error Rate (BER) vary over time in a given distance from the transmitter and that is highly sensitive to the composition of the channel.
Zarepour, E, Hassan, N, Hassan, M, Chou, CT & Warkiani, ME 2015, 'Design and analysis of a wireless nanosensor network for monitoring human lung cells', BodyNets International Conference on Body Area Networks.View/Download from: Publisher's site
© 2015 ICST. Thanks to nanotechnology, it is now possible to fabricate sensor nodes below 100 nanometers in size. Although wireless communication at this scale has not been successfully demonstrated yet, simulations confirm that these sensor nodes would be able to communicate in the terahertz band using graphene as a transmission antenna. These developments suggest that deployment of wireless nanoscale sensor networks (WNSNs) inside human body could be a reality one day. In this paper, we design and analyse a WNSN for monitoring human lung cells. We find that respiration, i.e., the periodic inhalation and exhalation of oxygen and carbon dioxide, is the major process that inuences the terahertz channel inside lung cells. The channel is characterised as a two-state channel, where it periodically switches between good and bad states. Using real human respiratory data, we -nd that the channel absorbs terahertz signal much faster when it is in bad state compared to good state. Our simulation experiments confirm that we could reduce transmission power of the nanosensors, and hence the electromagnetic radiation inside lungs due to deployment of WNSN, by a factor of 20 if we could schedule all communication only during good channel states. We propose two duty cycling protocols along with a simple channel estimation algorithm that enables nanosensors to achieve such scheduling.
Khoo, BL, Warkiani, ME, Guan, G, Tan, DSW, Lim, AST, Lim, WT, Yap, YS, Lee, SC, Soo, RA, Han, J & Lim, CT 2014, 'Ultra-high throughput enrichment of viable circulating tumor cells', IFMBE Proceedings, pp. 1-4.View/Download from: Publisher's site
© Springer International Publishing Switzerland 2014. Detection, enumeration and characterization of rare circulating tumor cells (CTCs) from the peripheral blood of cancer patients potentially provide critical insights into tumor biology and is promising for cancer diagnosis and prognosis. Here, we present a novel multiplexed spiral microfluidic device for ultra-high throughput, label-free enrichment of CTCs from clinically relevant blood volumes. The fast processing time of the technique (7.5 mL blood in < 5 min) and high sensitivity of the device lends itself to a broad range of potential genomic and transcriptomic applications. The method can specifically separate and preserve all fractions of blood (i.e., plasma, CTCs and PBMC) for diverse downstream analysis. CTCs were detected from 100% (10/10) of blood samples collected from patients with advanced stage metastatic breast (12- 56 CTC/ml) or lung cancer (30-153 CTC/ml). Cancer cells were characterized with immunostaining and fluorescence in situ hybridization (FISH) (HER2/neu). Retrieved cells were unlabelled and hence more viable for propagation and other informative analysis such as the next generation sequencing (NGS) to guide treatment and individualized patient care.
© Springer International Publishing Switzerland 2014. Rapid and accurate detection of pathogenic bacteria in drinking-water systems is a challenging problem. Filtration based concentration techniques have been widely used for isolation and recovery of C. parvum and Giardia (oo)cysts into small volumes for downstream analysis. Micro-fabricated membranes that contain pores with the same size and shape have been shown to be a good choice for efficient pathogen removal. In this study, a robust isoporous membrane was fabricated and validated for concentration and recovery of C. parvum and Giardia (oo)cysts from tap-water according to the EPA standard protocol. Microfiltration results of the isoporous polymeric microfilter revealed that using a simple backflushing procedure, more than 90% of the C. parvum and Giardia (oo)cysts spiked in the tap-water samples can be recovered, showing greater performance than available commercial microfilters. This research demonstrated the potential application of micro-fabricated filters with regular pores for large-scale filtration and monitoring of C. parvum and Giardia (oo)cysts contamination in drinking-water distribution systems.
Warkiani, ME, Tay, AKP, Guan, G & Han, J 2014, 'Next-generation microfilter: Large scale, continuous mammalian cell retention for perfusion bioreactors', 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, pp. 2474-2476.
© 14CBMS. In this study, we report on the development of the first membrane-less, clog-free microfiltration platform for ultra-high throughput (up to 1000 mL/min) cell separation, using a massively-multiplexed array of inertial microfluidic cell sorting channels. Our developed system consists of multiple layer (1020) of PDMS sheets with embossed microchannels (i.e., 200 individual spirals) bonded together for continuous size-based cell sorting from a large volume of biological fluid. Subsequent perfusion culture experiments using the cell retention system show the potential to significantly enhance overall efficiency of perfusion cell culture.
Warkiani, ME, Tay, AKP, Khoo, BL, Xu, X, Lim, CT & Han, J 2014, 'Enabling reliable detection of low abundance malaria parasites from blood using inertial microfluidics', 18th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2014, pp. 1157-1159.
© 14CBMS. In this paper, a highly efficient inertial microfluidic device was described to enable the enrichment and purification of malaria parasites from blood, which leads to more reliable and specific PCR-based malaria detection. The device makes use of equilibrium between shear-modulated inertial lift and wall-induced lift forces to remove WBCs, thereby facilitating malaria parasite enrichment. The cascaded system is able to process 1 mL of lysed blood in 15 min, with the WBC depletion efficiency of 99.99% which is higher than any commercially available kit (i.e., CD-45 coated beads) for this purpose. Parasite densities ranging from 103 to 104 P. falciparum parasites per mL ( 2 per L) have been quantified in whole blood using quantitative PCR. Obtained results revealed that the sample preparation using the inertial microfluidic device can significantly enhance the PCR results and make it more reliable by removing most of the unwanted genomic materials and PCR inhibitors.
Guan, G, Warkiani, ME, Luan, KB, Lim, CT, Chen, PCY & Han, J 2013, 'High throughput circulating tumor cell isolation using trapezoidal inertial microfluidics', 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013, pp. 23-25.
A novel Dean coupled inertial microfluidic device with trapezoidal cross-section spiral channel for ultra-fast, label- free enrichment of circulating tumor cells (CTCs) from clinically relevant blood volumes is reported in this work. Using this single spiral microchannel with one inlet and two outlets, we have successfully isolated and recovered more than 80% of cancer cell line cells spiked in 7.5 mL of blood within 8 min with high purity. Putative CTCs were detected and isolated from 100% patient samples with advanced stage metastatic breast and lung cancer using standard biomarkers. DNA fluorescence in-situ hybridization (FISH) was also carried out to evaluate HER2 status in CTCs isolated from patient samples. Copyright © (2013) by the Chemical and Biological Microsystems Society All rights reserved.
Jing, T, Ramji, R, Warkiani, ME, Lim, CT, Han, J & Chen, CH 2013, 'High throughput single cancer cell encapsulation and self sorting for protease assay by using jetting microfluidics', 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013, pp. 1373-1375.
In this work, a droplet microfluidic device integrated with droplet sorting function was presented for single cancer cell encapsulations and protease activity measurements. Individual cells were encapsulated into aqueous droplets at flow focusing junction under jetting conditions. Droplets with cells encapsulated inside are larger than other empty droplets, enabling effective droplet sorting through a deterministic lateral displacement micro-pillar design. All droplets with cells are therefore collected by an observation chamber for enzymatic activity monitoring. Here we focused on measuring matrix metalloproteinase (MMPs) secretion intensities at the individual cell level to obtain further insights into the malignant characteristics of these cells.
Warkiani, ME, Khoo, BL, Tan, DSW, Bhagat, AAS, Lim, WT, Han, J & Lim, CT 2013, 'Circulating tumor cell (CTC) enrichment: Ultra high throughput processing of clinically relevant blood volumes using a multiplexed spiral biochip', 17th International Conference on Miniaturized Systems for Chemistry and Life Sciences, MicroTAS 2013, pp. 1156-1158.
Detection and characterization of circulating tumor cells (CTCs) from minimally invasive "liquid biopsy" provides critical insights into tumor biology and is critical for companion diagnostics and care. Here, we present a multiplexed spiral biochip for ultra-high throughput isolation of CTCs using inertial microfluidics to realize a single step label-free enrichment process. This device is capable of efficient cell separation of clinically relevant blood volumes in a short period of time (7.5 mL blood in 35 min). CTCs were successfully detected and isolated from 100% (50/50) blood samples collected from patients with advanced stage metastatic breast and lung cancer. They were identified under immunofluorescence assays (cytokeratin positive), as well as molecular probes (EGFR or HER2 positive). CTC recovery rate ranges from 3-1535 CTCs/mL and obtained under high purity (1 CTC for every 30-100 white blood cells detected). Retrieved cells are unlabelled and hence more viable for propagation, drug development and other downstream analysis.
Polymeric micro-fabricated filters have excellent sieving properties. Their identical properties such as high surface porosity and perfectly patterned pore structure, which is combined with mechanical strength make them ideal for many applications such as microorganism removal, blood filtration and protein purification. To improve the performance of the micro-fabricated filters, we employed oxygen plasma treatment to increase the surface hydrophilicity and reduce the membrane fouling during microfiltration. Hydrophilization and integrity of the surfaces were analyzed by contact angle measurements and topographic imaging with an atomic force microscope (AFM). Treatment of polymeric membranes with oxygen plasma led to a stable hydrophilization and an increased surface roughness. The filtration properties of the modified and unmodified membranes were examined using clay particles. A significant increase in total collected volume of filtrate was observed for the treated membranes during filtration of simulated drinking water samples using clay suspension. © (2012) Trans Tech Publications, Switzerland.
Warkiani, ME, Gong, HQ, Fane, AG & Wicaksana, F 2011, 'Effects of Membrane Pore Morphology on Fouling Behavior of Polymeric Micro-fabricated Membrane During Crossflow Micro-filtration', CLEAN TECHNOLOGY 2011: BIOENERGY, RENEWABLES, STORAGE, GRID, WASTE AND SUSTAINABILITY, CTSI Clean Technology and Sustainable Industries Conference and Expo, Clean Technology 2011, CRC PRESS-TAYLOR & FRANCIS GROUP, Boston, MA, pp. 220-223.
Warkiani, ME, Gong, HQ, Fane, AG & Wicaksana, F 2011, 'Effects of membrane pore morphology on fouling behavior of polymeric microfabricated membrane during crossflow micro-filtration', Technical Proceedings of the 2011 NSTI Nanotechnology Conference and Expo, NSTI-Nanotech 2011, pp. 569-572.
The effects of the membrane pore geometry on the fouling mechanism of high-flux polymeric micro-fabricated membranes were studied using latex particles with different sizes and concentrations. The micro-fabricated membranes are made of a thin layer SU-8 photoresist with smooth surface and well defined slotted (or circular) pores using dissolving mold technique. For particles larger than the membrane pore size, the fouling mechanism was pore blockage followed by cake filtration while pore narrowing was the dominant mechanism when the particles were smaller than the membrane pore size. Filtration with slotted membrane offers some interesting advantages over conventional filtration with circular pores. The initial rate of flux decline was slower for the membrane with slotted pores compared to the membrane with circular pores since the initial particle deposition only covered a small fraction of the slits. The flow resistance is also much lower for the slotted membrane compare to the circular membrane.